Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QTA68_RS12650 Genome accession   NZ_CP129005
Coordinates   2451293..2451571 (+) Length   92 a.a.
NCBI ID   WP_006924031.1    Uniprot ID   -
Organism   Bacillus cereus strain lycx     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2446293..2456571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTA68_RS12630 (QTA68_12630) - 2447970..2448779 (+) 810 WP_000664544.1 papain-like cysteine protease family protein -
  QTA68_RS12635 (QTA68_12635) - 2448805..2449407 (+) 603 WP_290102473.1 hypothetical protein -
  QTA68_RS12640 (QTA68_12640) - 2449647..2449898 (-) 252 WP_098391767.1 LuxR C-terminal-related transcriptional regulator -
  QTA68_RS12645 (QTA68_12645) - 2450275..2451153 (+) 879 WP_144596361.1 helix-turn-helix domain-containing protein -
  QTA68_RS12650 (QTA68_12650) abrB 2451293..2451571 (+) 279 WP_006924031.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QTA68_RS12655 (QTA68_12655) - 2452092..2453342 (+) 1251 WP_006924032.1 hypothetical protein -
  QTA68_RS12660 (QTA68_12660) - 2453410..2454168 (+) 759 WP_000347986.1 TSUP family transporter -
  QTA68_RS12665 (QTA68_12665) - 2454422..2455081 (+) 660 WP_000682539.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10446.30 Da        Isoelectric Point: 10.2599

>NTDB_id=850412 QTA68_RS12650 WP_006924031.1 2451293..2451571(+) (abrB) [Bacillus cereus strain lycx]
MKSRGITRKADSMGRIVIPMEIRRNLGIVEKDSLEMFIEEDQIILRKYQSPRSCALTGDISDSNISLANGKIIVSPNGRE
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=850412 QTA68_RS12650 WP_006924031.1 2451293..2451571(+) (abrB) [Bacillus cereus strain lycx]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAACTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAAATTATTTTACGAAAATATCAATCTCCAAGATCTT
GTGCACTTACAGGAGATATTTCAGACAGTAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGAGGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489