Detailed information NTG0085041

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: QUE10_RS21850
• Genome accession: NZ_AP027217
• Coordinates: 4472160..4473185 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain JNE170426
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4467160..4478185

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUE10_RS21820 (JNE170426_41680)	zapB	4467244..4467489 (+)	246	WP_077784687.1	septal ring assembly protein ZapB	-
QUE10_RS21825 (JNE170426_41690)	rraA	4467574..4468059 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
QUE10_RS21830 (JNE170426_41700)	menA	4468152..4469078 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
QUE10_RS21835 (JNE170426_41710)	hslU	4469145..4470476 (-)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
QUE10_RS21840 (JNE170426_41720)	hslV	4470486..4471016 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
QUE10_RS21845 (JNE170426_41730)	ftsN	4471109..4472068 (-)	960	WP_000068834.1	cell division protein FtsN	-
QUE10_RS21850 (JNE170426_41740)	cytR	4472160..4473185 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
QUE10_RS21855 (JNE170426_41750)	priA	4473341..4475539 (-)	2199	WP_001350069.1	primosomal protein N'	Machinery gene
QUE10_RS21860 (JNE170426_41760)	rpmE	4475742..4475954 (+)	213	WP_000710769.1	50S ribosomal protein L31	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=85041 QUE10_RS21850 WP_000644904.1 4472160..4473185(-) (cytR) [Escherichia coli strain JNE170426]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=85041 QUE10_RS21850 WP_000644904.1 4472160..4473185(-) (cytR) [Escherichia coli strain JNE170426]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628