Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QVG61_RS09760 Genome accession   NZ_CP128988
Coordinates   2121143..2122501 (-) Length   452 a.a.
NCBI ID   WP_289930446.1    Uniprot ID   -
Organism   Thiohalobacter sp. IOR34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2116143..2127501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVG61_RS09740 (QVG61_09740) ccsA 2116465..2117271 (+) 807 WP_289930442.1 cytochrome c biogenesis protein CcsA -
  QVG61_RS09745 (QVG61_09745) - 2117376..2118662 (+) 1287 WP_289930443.1 HlyC/CorC family transporter -
  QVG61_RS09750 (QVG61_09750) - 2118669..2119517 (-) 849 WP_289930444.1 methyltransferase domain-containing protein -
  QVG61_RS09755 (QVG61_09755) - 2120046..2121023 (+) 978 WP_289930445.1 FHA domain-containing protein -
  QVG61_RS09760 (QVG61_09760) radA 2121143..2122501 (-) 1359 WP_289930446.1 DNA repair protein RadA Machinery gene
  QVG61_RS09765 (QVG61_09765) alr 2122515..2123588 (-) 1074 WP_289930447.1 alanine racemase -
  QVG61_RS09770 (QVG61_09770) dnaB 2123588..2124976 (-) 1389 WP_289930448.1 replicative DNA helicase -
  QVG61_RS09775 (QVG61_09775) rplI 2125200..2125646 (-) 447 WP_289930449.1 50S ribosomal protein L9 -
  QVG61_RS09780 (QVG61_09780) - 2125723..2126637 (-) 915 WP_289930450.1 hypothetical protein -
  QVG61_RS09785 (QVG61_09785) rpsR 2126689..2126913 (-) 225 WP_289930451.1 30S ribosomal protein S18 -
  QVG61_RS09790 (QVG61_09790) priB 2126939..2127280 (-) 342 WP_289930452.1 primosomal replication protein N -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 47669.72 Da        Isoelectric Point: 6.8406

>NTDB_id=850226 QVG61_RS09760 WP_289930446.1 2121143..2122501(-) (radA) [Thiohalobacter sp. IOR34]
MAKPKILYSCSSCGAQSPKWVGQCPDCQAWNTLVEVRTQVVPSGRGGGYAGAAAGEVQPLAEVEAGSEIRTGTGIGELDR
VLGGGLVAGSVVLIGGDPGIGKSTLLLQALVSIGDRLSTLYVTGEESLQQVSLRARRLGLEGGAVRLLAETAVEAILATA
ERERPQVLVIDSIQTLFTQQLQSAPGSVAQVRESAAQLVRYAKQSGTALFLVGHVTKEGQLAGPRVLEHMVDTVLYFEGD
PGGRYRVVRAIKNRFGAVNELGVFAMGDRGLREVANPSAIFLSRHEEPVSGSVIMVTREGTRPLLVEVQALVADSHLANP
RRVTLGLEQNRLSMLLAVLHRHGGIAVGDQDVFVNVVGGVRVAETAADLAVLLAVLSSFRDRPLPNDLVVFGEIGLAGEV
RPVPNGQERLQEAAKHGFKRAVVPAANLARGRTVEGLEVTPAARLAEVLEAI

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=850226 QVG61_RS09760 WP_289930446.1 2121143..2122501(-) (radA) [Thiohalobacter sp. IOR34]
ATGGCGAAGCCGAAGATTCTCTATAGCTGTTCCAGTTGCGGCGCCCAGTCGCCGAAGTGGGTTGGCCAGTGTCCGGACTG
CCAGGCATGGAACACCCTGGTCGAGGTCCGCACCCAGGTCGTGCCGTCCGGCCGGGGCGGCGGCTATGCGGGGGCGGCGG
CCGGCGAGGTGCAGCCGCTGGCCGAGGTCGAGGCCGGCAGCGAGATCCGTACCGGCACCGGCATCGGCGAACTGGACCGG
GTGCTGGGCGGCGGCCTGGTGGCCGGCTCGGTGGTGCTGATCGGCGGCGATCCGGGGATTGGCAAGTCGACGCTGCTGTT
GCAGGCCCTGGTGTCGATCGGTGACCGCCTGTCGACCCTCTACGTGACCGGCGAGGAATCGTTGCAGCAGGTGTCGCTGC
GTGCCCGCCGCCTGGGCCTGGAAGGCGGCGCGGTGCGGCTGTTGGCGGAGACGGCGGTGGAGGCCATCCTCGCCACCGCC
GAGCGCGAGCGGCCCCAGGTGCTGGTGATCGATTCCATCCAGACCCTGTTCACCCAGCAGCTTCAGTCGGCGCCTGGCTC
GGTGGCCCAGGTCCGGGAGAGCGCCGCCCAGCTGGTGCGCTATGCCAAGCAGAGCGGCACCGCCCTGTTTCTGGTCGGCC
ATGTCACCAAGGAGGGGCAGCTCGCCGGGCCGCGGGTGCTGGAGCACATGGTCGACACCGTGCTCTATTTCGAGGGGGAT
CCCGGCGGCCGTTACCGGGTGGTGCGGGCGATCAAGAACCGCTTCGGTGCCGTCAACGAGCTGGGCGTATTCGCCATGGG
CGACCGCGGCCTGCGCGAGGTGGCCAACCCTTCGGCGATCTTCCTGTCGCGCCACGAGGAGCCGGTCTCCGGCAGCGTCA
TCATGGTCACCCGGGAGGGCACCCGGCCGCTGCTGGTCGAGGTGCAGGCGCTGGTGGCGGATTCGCACCTGGCCAATCCG
CGCCGTGTGACCCTGGGCCTGGAACAGAACCGCCTGTCCATGCTGCTTGCGGTGCTGCACCGCCACGGTGGCATCGCGGT
CGGCGACCAGGACGTCTTCGTCAACGTGGTGGGCGGGGTGCGGGTGGCCGAGACCGCGGCCGATCTGGCGGTGCTGCTGG
CGGTGCTCTCCAGCTTCCGCGACCGGCCGCTGCCGAACGATCTGGTGGTGTTCGGCGAGATCGGCCTGGCCGGTGAGGTT
CGGCCGGTGCCGAACGGCCAGGAGCGGTTGCAGGAGGCGGCCAAGCACGGTTTCAAACGGGCCGTCGTGCCGGCTGCCAA
CCTTGCCCGGGGGCGGACGGTGGAGGGACTGGAGGTAACGCCGGCGGCTCGCCTGGCAGAGGTGCTCGAGGCGATCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.669

100

0.498
  radA Streptococcus pneumoniae Rx1

46.46

100

0.465
  radA Streptococcus pneumoniae D39

46.46

100

0.465
  radA Streptococcus pneumoniae R6

46.46

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.46

100

0.465
  radA Streptococcus mitis SK321

46.46

100

0.465
  radA Streptococcus mitis NCTC 12261

46.239

100

0.462