Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QVG61_RS01265 Genome accession   NZ_CP128988
Coordinates   258382..259443 (-) Length   353 a.a.
NCBI ID   WP_354671196.1    Uniprot ID   -
Organism   Thiohalobacter sp. IOR34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 253382..264443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVG61_RS01245 (QVG61_01245) rpoH 254009..254878 (-) 870 WP_289931498.1 RNA polymerase sigma factor RpoH -
  QVG61_RS01250 (QVG61_01250) - 254990..256303 (-) 1314 WP_289931499.1 diguanylate cyclase -
  QVG61_RS01255 (QVG61_01255) ftsX 256669..257685 (-) 1017 WP_289931500.1 permease-like cell division protein FtsX -
  QVG61_RS01260 (QVG61_01260) ftsE 257682..258350 (-) 669 WP_289931501.1 cell division ATP-binding protein FtsE -
  QVG61_RS01265 (QVG61_01265) pilA 258382..259443 (-) 1062 WP_354671196.1 signal recognition particle-docking protein FtsY Machinery gene
  QVG61_RS01270 (QVG61_01270) - 259795..261183 (+) 1389 WP_289931503.1 pitrilysin family protein -
  QVG61_RS01275 (QVG61_01275) - 261173..262501 (+) 1329 WP_289931504.1 pitrilysin family protein -
  QVG61_RS01280 (QVG61_01280) - 262911..263504 (+) 594 WP_289931505.1 lamin tail domain-containing protein -
  QVG61_RS01285 (QVG61_01285) rsmD 263578..264183 (+) 606 WP_289931507.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38207.58 Da        Isoelectric Point: 4.7681

>NTDB_id=850213 QVG61_RS01265 WP_354671196.1 258382..259443(-) (pilA) [Thiohalobacter sp. IOR34]
MFGFGRKKDDPTQKPAQAEATEAGRPQAEETDAAAESTPRRGLFARLRDGLAKTRSGLTEGIASLLLGRRQIDDELLEEL
ETQLLIADVGVEATQAVIEDLTRRVERKQLKDAEALMQALREDMAEILRPVAVPLQIPDDTRPFVILMVGVNGVGKTTTI
GKLANRLQQEGKRVMLAAGDTFRAAAVEQLQVWGERNGIPVIAQQQGADSASVIFDAFQAARARDMDVLIADTAGRLHTQ
SNLMEELKKIKRVLTKIDPQAPHEVMLVVDAGTGQNALNQALEFHQAVGLSGLTLTKLDGTAKGGIIFAIAKRLGVPIRF
IGVGEGIEDLRVFDADEFVDALFSREAGDQDAA

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=850213 QVG61_RS01265 WP_354671196.1 258382..259443(-) (pilA) [Thiohalobacter sp. IOR34]
ATCTTTGGTTTCGGACGAAAGAAGGACGACCCGACGCAGAAGCCGGCCCAGGCCGAGGCGACCGAGGCCGGGCGCCCGCA
GGCGGAGGAAACGGACGCGGCCGCCGAGTCGACGCCGCGTCGCGGCCTGTTTGCGCGCCTCAGGGACGGACTGGCCAAGA
CCCGCAGCGGACTGACCGAGGGCATCGCCAGCCTGCTGCTCGGCCGGCGGCAGATCGACGACGAGCTGCTGGAGGAACTG
GAGACCCAGCTGCTGATCGCCGACGTCGGCGTGGAGGCCACGCAGGCGGTGATCGAGGACCTCACCCGCCGCGTCGAGCG
CAAGCAGCTGAAGGATGCCGAGGCACTGATGCAGGCGCTGCGCGAGGACATGGCGGAAATCCTGCGCCCGGTCGCGGTAC
CGCTGCAGATCCCCGACGACACCCGGCCCTTCGTGATCCTGATGGTCGGCGTCAACGGCGTCGGCAAGACCACCACCATC
GGCAAGCTGGCGAACCGGCTGCAACAGGAGGGCAAGCGGGTGATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCGGT
GGAACAGCTCCAGGTCTGGGGCGAGCGCAACGGCATCCCGGTGATCGCCCAGCAGCAGGGCGCCGACTCCGCCTCGGTGA
TCTTCGACGCCTTCCAGGCGGCGCGGGCGCGTGACATGGACGTGCTGATCGCCGACACCGCCGGCCGCCTGCACACCCAG
TCGAACCTGATGGAAGAACTGAAGAAGATCAAGCGGGTGCTGACCAAGATCGACCCCCAGGCTCCGCACGAGGTGATGCT
GGTGGTCGATGCCGGCACCGGCCAGAACGCCCTCAACCAGGCCCTGGAATTCCACCAGGCGGTGGGCCTGAGCGGCCTCA
CCCTGACCAAGCTGGACGGCACCGCCAAGGGCGGCATCATCTTCGCCATCGCCAAGCGGCTGGGGGTGCCGATCCGCTTC
ATCGGCGTCGGTGAGGGCATCGAGGATCTGCGCGTGTTCGACGCCGACGAGTTCGTCGACGCCCTGTTCAGCCGCGAGGC
CGGCGACCAGGACGCCGCCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(143-343)

SRP54-type protein, helical bundle domain (SRP54_N)

(58-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.614

94.051

0.504