Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   QWH96_RS08110 Genome accession   NZ_CP128987
Coordinates   1589937..1590974 (-) Length   345 a.a.
NCBI ID   WP_049520051.1    Uniprot ID   A0AAE9QR98
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1584937..1595974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS08085 (QWH96_08090) rbsC 1584960..1585901 (-) 942 WP_049520050.1 ribose ABC transporter permease -
  QWH96_RS08090 (QWH96_08095) - 1585903..1587381 (-) 1479 WP_046159785.1 sugar ABC transporter ATP-binding protein -
  QWH96_RS08095 (QWH96_08100) rbsD 1587397..1587795 (-) 399 WP_338433657.1 D-ribose pyranase -
  QWH96_RS08100 (QWH96_08105) rbsK 1587770..1588681 (-) 912 WP_003061715.1 ribokinase -
  QWH96_RS08105 (QWH96_08110) - 1588674..1589657 (-) 984 WP_003053684.1 LacI family DNA-binding transcriptional regulator -
  QWH96_RS08110 (QWH96_08115) sepM 1589937..1590974 (-) 1038 WP_049520051.1 SepM family pheromone-processing serine protease Regulator
  QWH96_RS08115 (QWH96_08120) coaD 1590961..1591452 (-) 492 WP_003051905.1 pantetheine-phosphate adenylyltransferase -
  QWH96_RS08120 (QWH96_08125) rsmD 1591442..1591981 (-) 540 WP_014612463.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QWH96_RS08125 (QWH96_08130) asnA 1592175..1593167 (-) 993 WP_049520052.1 aspartate--ammonia ligase -
  QWH96_RS08130 (QWH96_08135) arcC 1593494..1594444 (-) 951 WP_049520053.1 carbamate kinase -
  QWH96_RS08135 (QWH96_08140) - 1594748..1595692 (+) 945 WP_065359380.1 IS110 family transposase -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37574.14 Da        Isoelectric Point: 9.5393

>NTDB_id=850193 QWH96_RS08110 WP_049520051.1 1589937..1590974(-) (sepM) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MKTIKKIKWWLISLIALVALLIVLFFPLPYYVEMPGGAYDIRSVVKVNGKEDKDKGSYQFVAVSLSRASLAQLLYAWLTP
FSEISSVEDTTGGYSDADYIRINQFYMETSQNAAVYQALTLADKPVTLDYKGVYVLDISKDSTFKGTLNLADTVTGVNHK
QFTSSTELVDYVSHLKLGDKVTVQFISNSEPKSETGRIIKLKNGKNGIGIALTDHTKVNSADKIEFSTQGVGGPSAGLMF
TLDIYDQINKEDLRKGRHIAGTGTIGKDGEVGDIGGAGLKVVAAANAGAEIFFVPNNPVDKAVKKANPKAISNYEEAKRA
AKQLKTKMKIVPVTTVQDALAYLRQ

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=850193 QWH96_RS08110 WP_049520051.1 1589937..1590974(-) (sepM) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGAAAACAATTAAAAAAATTAAATGGTGGCTGATTAGTCTAATTGCCCTCGTGGCTCTGCTTATCGTCCTTTTTTTCCC
TCTTCCTTATTATGTTGAAATGCCTGGCGGAGCCTATGACATTCGATCTGTGGTCAAGGTTAATGGCAAAGAAGATAAAG
ATAAAGGCTCCTATCAGTTTGTGGCAGTCAGTCTCAGTCGAGCCAGTTTAGCTCAGTTGCTCTATGCTTGGCTAACCCCT
TTTAGTGAAATCAGTTCAGTTGAGGATACCACAGGCGGTTATAGCGATGCAGACTATATCCGCATTAATCAATTCTACAT
GGAAACCTCACAAAATGCTGCGGTCTATCAGGCATTGACCTTGGCAGACAAACCAGTTACTTTGGACTACAAAGGGGTAT
ATGTGTTAGATATTAGCAAGGATTCAACCTTTAAAGGTACTTTAAACTTAGCAGATACGGTAACGGGAGTGAATCACAAA
CAATTTACGAGTTCAACAGAACTTGTGGACTATGTCTCTCATTTAAAACTTGGTGATAAGGTGACTGTGCAGTTTATTAG
TAATAGCGAACCTAAGTCTGAAACAGGTCGTATCATCAAACTAAAAAATGGTAAAAATGGTATCGGCATTGCTTTAACAG
ACCATACTAAAGTCAATTCAGCAGACAAAATCGAGTTTAGTACCCAAGGTGTTGGGGGTCCTAGCGCAGGCTTAATGTTT
ACATTAGATATCTACGACCAAATTAATAAAGAAGACCTTCGTAAAGGAAGACATATCGCCGGGACAGGAACCATTGGTAA
AGATGGTGAAGTTGGAGATATTGGCGGTGCGGGTCTTAAGGTCGTTGCTGCTGCAAATGCTGGTGCTGAGATTTTCTTTG
TGCCGAATAATCCTGTGGATAAAGCTGTTAAAAAAGCCAATCCAAAAGCTATTAGCAATTATGAAGAGGCCAAGCGAGCA
GCCAAGCAGTTAAAAACAAAAATGAAAATTGTTCCTGTAACAACTGTTCAGGATGCCCTAGCCTACCTTCGTCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

71.594

100

0.716