Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   QWH96_RS00700 Genome accession   NZ_CP128987
Coordinates   114674..115627 (+) Length   317 a.a.
NCBI ID   WP_003060701.1    Uniprot ID   A0A9X8T146
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 109674..120627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS00660 (QWH96_00660) - 110500..110865 (+) 366 WP_003055257.1 DUF1033 family protein -
  QWH96_RS00665 (QWH96_00665) comGA/cglA 110946..111887 (+) 942 WP_338433685.1 competence type IV pilus ATPase ComGA Machinery gene
  QWH96_RS00670 (QWH96_00670) comYB 111823..112854 (+) 1032 WP_015057201.1 competence type IV pilus assembly protein ComGB Machinery gene
  QWH96_RS00675 (QWH96_00675) comYC 112856..113182 (+) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  QWH96_RS00680 (QWH96_00680) comGD 113157..113585 (+) 429 WP_049519672.1 competence type IV pilus minor pilin ComGD -
  QWH96_RS00685 (QWH96_00685) comGE 113593..113838 (+) 246 WP_049519695.1 competence type IV pilus minor pilin ComGE -
  QWH96_RS00690 (QWH96_00690) comGF 113819..114259 (+) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF -
  QWH96_RS00695 (QWH96_00695) comGG 114282..114611 (+) 330 WP_338433753.1 competence type IV pilus minor pilin ComGG -
  QWH96_RS00700 (QWH96_00700) comYH 114674..115627 (+) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  QWH96_RS00705 (QWH96_00705) - 115686..116882 (+) 1197 WP_003058485.1 acetate kinase -
  QWH96_RS00710 (QWH96_00710) - 117188..117394 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  QWH96_RS00715 (QWH96_00715) - 117497..118177 (+) 681 WP_012766451.1 type II CAAX endopeptidase family protein -
  QWH96_RS00720 (QWH96_00720) - 118195..118632 (+) 438 WP_012766452.1 hypothetical protein -
  QWH96_RS00725 (QWH96_00725) proC 118771..119547 (-) 777 WP_049519668.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36049.01 Da        Isoelectric Point: 4.7910

>NTDB_id=850159 QWH96_RS00700 WP_003060701.1 114674..115627(+) (comYH) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MNFEKIEEAYQLLLENSQLIENDLKTHIYDAIVEQNSFYLGAEGASPQVAQNINKLKALHLTKEEWRRAYQFIFIKAAQT
EQLQANHQFTPDAIGFILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKKLDYVGIELDDLLIDLSASIAEVMDSS
ARFIQEDAVRPQLLKESDVVISDLPVGYYPNDDIAKRYKVASSEEHTYAHHLLMEQSLKYLKKDGFAIFLAPVNLLTSSQ
SQLLKNWLTGYAQVVALITLPDSIFGHPSNAKSIIVLQKQTDHPMETFVYPIRDLKLAENIHDFMQNFKKWKQDNVN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=850159 QWH96_RS00700 WP_003060701.1 114674..115627(+) (comYH) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGAATTTTGAAAAAATTGAAGAAGCCTATCAGTTACTTTTAGAGAATAGTCAACTGATTGAAAATGATCTAAAAACACA
TATTTATGATGCCATCGTTGAGCAAAACTCTTTTTATTTAGGTGCTGAGGGAGCTAGTCCTCAAGTTGCCCAGAACATTA
ACAAACTGAAAGCCTTACACCTGACTAAAGAAGAATGGCGTAGAGCTTACCAGTTTATTTTTATTAAGGCAGCTCAGACT
GAGCAGCTCCAAGCAAACCATCAGTTCACACCAGATGCTATTGGTTTCATTCTGCTATATCTTTTGGAACAATTGAGTGA
CAAAGATAGCCTAGAAGTCCTTGAAATTGGCAGTGGTACGGGAAATCTAGCACAAACTCTCCTCAATAATACGAGTAAGA
AACTTGATTATGTAGGAATTGAACTTGACGACCTCTTAATTGATTTATCAGCAAGTATTGCTGAAGTAATGGACTCTTCA
GCTCGTTTTATTCAAGAAGATGCGGTAAGACCGCAATTGTTAAAAGAAAGCGATGTTGTTATCAGTGACTTGCCAGTGGG
TTATTATCCTAATGATGACATTGCTAAGCGCTATAAGGTAGCTAGTTCTGAGGAACACACCTATGCTCATCATTTACTTA
TGGAACAATCTTTAAAGTATTTGAAAAAAGATGGTTTTGCCATTTTCTTGGCACCTGTCAATTTGTTGACAAGCTCTCAG
AGCCAATTGTTGAAAAATTGGTTAACTGGCTATGCCCAGGTAGTGGCCTTGATTACTCTACCAGATTCTATATTTGGTCA
TCCCTCTAATGCTAAGTCCATTATTGTCTTGCAAAAGCAGACAGACCATCCGATGGAAACCTTTGTTTATCCTATTCGAG
ACTTGAAGCTTGCAGAGAATATTCATGACTTTATGCAAAATTTCAAAAAATGGAAACAGGATAATGTCAATTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

66.456

99.685

0.662
  comYH Streptococcus mutans UA159

66.139

99.685

0.659