Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   V5F91_RS08135 Genome accession   NZ_CP145064
Coordinates   1571860..1574796 (+) Length   978 a.a.
NCBI ID   WP_017147023.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S_2024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1566860..1579796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F91_RS08120 (V5F91_08140) - 1567193..1567783 (-) 591 WP_003689643.1 aminodeoxychorismate/anthranilate synthase component II -
  V5F91_RS08125 (V5F91_08145) znuD 1568194..1570470 (+) 2277 WP_025455952.1 TonB-dependent zinc receptor ZnuD -
  V5F91_RS08130 (V5F91_08150) - 1571011..1571790 (-) 780 WP_003689647.1 phosphatidylserine decarboxylase -
  V5F91_RS08135 (V5F91_08155) uvrA 1571860..1574796 (+) 2937 WP_017147023.1 excinuclease ABC subunit UvrA Machinery gene
  V5F91_RS08140 (V5F91_08160) - 1574807..1576789 (+) 1983 WP_003692251.1 AAA family ATPase -
  V5F91_RS08145 (V5F91_08165) - 1576939..1577082 (-) 144 WP_010360533.1 hypothetical protein -
  V5F91_RS08150 (V5F91_08170) - 1577105..1577293 (+) 189 WP_014580099.1 transposase -
  V5F91_RS08155 (V5F91_08175) - 1577290..1577943 (-) 654 WP_353174145.1 IS1595 family transposase -
  V5F91_RS08160 (V5F91_08180) - 1578085..1579719 (-) 1635 WP_003689652.1 CTP synthase -

Sequence

Protein


Download         Length: 978 a.a.        Molecular weight: 108861.03 Da        Isoelectric Point: 7.4694

>NTDB_id=849874 V5F91_RS08135 WP_017147023.1 1571860..1574796(+) (uvrA) [Neisseria gonorrhoeae strain WHO_S_2024]
MPSERGFRRHPRKCYNIGFPLFFQAASIMCNHHPRHSHDNDTIRIRGARTHNLKNIDLDIPRHKLVVVTGLSGSGKSSLA
FDTLYAEGQRRYVESLSAYARQFLQMMDKPDVDLIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLYARVGTPYCP
EHNLSLSSQTVSQMVDAVLKLPEDTRVMILGPAVRERKGEFVDFFADLQAQGFARVRVDGEVYQLDEVPKLEKNIKHNID
VVIDRVKVKADIKQRLAESFETALRHGNERALAMEMDSGEEHWFSARFACPVCSYSLPELEPRLFSFNNPMGSCPTCDGL
GNTNFFDPEKVVAHPELSLATGAIDGWDKRNQFYFQMIQSLAHHYKFDVNVAWETLPEKVKKVVLHGSGKEVIDFTYLSE
RGTTFNRSHAFEGIIPNLERRYRETDSETVREKLREYQNHRACPSCGGARLRKEARYVYVGGEPLHEVSAWPLTKTHRFF
ETLDLDGNKKQIAEKILKEITERLGFLINVGLDYLNLSRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRD
NDRLLATLKRLRDLGNSVIVVEHDEDAIREADFVVDMGPGAGEHGGNVLIADTPENVAKCEKSVTGQYLGGKKSIAVPSE
RTPVNPGRMLVLKGARGNNLKNVTLELPLGLITCITGVSGSGKSTLINDTLAKITARELNRAQEEPAPYDDIRGLEHLDK
VINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPLSRERGYNVGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCE
VCHGKRYNRETLEIQYKGKNISQVLDMTVEEAREFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGEAQRVKLALEL
SKRDTGRTLYILDEPTTGLHFADIALLLEVIGRLKGKGNSIVIIEHNLDVIKTADWIVDLGPEGGDGGGKVIAKGSPEQV
AKIKGSYTGKYLKVALNK

Nucleotide


Download         Length: 2937 bp        

>NTDB_id=849874 V5F91_RS08135 WP_017147023.1 1571860..1574796(+) (uvrA) [Neisseria gonorrhoeae strain WHO_S_2024]
ATGCCGTCTGAACGCGGCTTCAGACGGCATCCGAGAAAGTGCTACAATATCGGTTTTCCTTTATTTTTTCAGGCGGCATC
CATTATGTGCAACCATCATCCCCGACATTCGCACGACAACGACACCATCCGCATTCGCGGCGCGCGCACGCATAATTTGA
AAAACATCGATTTGGACATTCCCCGCCACAAGCTCGTGGTGGTAACAGGATTGTCAGGCAGCGGCAAATCATCGCTGGCG
TTTGATACTTTATATGCCGAAGGGCAGCGGCGTTATGTCGAGAGCCTGTCTGCCTATGCGCGGCAGTTTTTGCAGATGAT
GGACAAACCCGATGTCGATTTGATTGAAGGCCTGTCGCCTGCGATTTCCATCGAGCAGAAATCCACCAGCCACAATCCGC
GTTCCACCGTCGGCACGGTAACGGAAATCCACGACTACCTGCGCCTTTTATACGCCCGTGTCGGCACGCCGTATTGCCCC
GAACACAATTTGTCGCTGTCGAGCCAAACCGTGTCGCAGATGGTTGATGCCGTGTTGAAGCTGCCGGAAGACACGCGCGT
GATGATTCTGGGGCCGGCGGTGCGCGAGCGTAAGGGCGAGTTTGTCGATTTCTTTGCCGACTTGCAGGCGCAAGGCTTTG
CCCGTGTGCGCGTGGACGGCGAAGTCTATCAGCTTGACGAAGTACCGAAGCTGGAAAAAAACATCAAACACAATATCGAC
GTCGTCATCGACCGCGTGAAAGTGAAAGCCGACATCAAACAACGACTGGCGGAAAGTTTTGAAACCGCATTACGCCACGG
CAACGAGCGCGCGCTGGCAATGGAAATGGACAGCGGCGAAGAACATTGGTTTTCCGCGCGTTTTGCCTGCCCCGTGTGTT
CGTACAGCCTGCCCGAATTGGAACCGCGCCTCTTTTCGTTCAACAACCCGATGGGTTCCTGCCCGACTTGCGACGGCTTG
GGCAACACCAATTTCTTTGACCCCGAAAAAGTGGTCGCCCACCCTGAATTGTCATTGGCAACGGGCGCGATTGACGGCTG
GGACAAGCGCAACCAGTTCTATTTCCAAATGATTCAATCGCTGGCGCATCATTATAAATTTGATGTCAACGTCGCTTGGG
AAACTTTGCCTGAAAAAGTCAAAAAAGTCGTGTTGCACGGCTCGGGCAAAGAAGTCATTGATTTCACCTACCTGTCCGAA
CGCGGCACCACCTTCAACCGCAGCCACGCCTTCGAGGGCATCATCCCCAATCTCGAACGCCGCTACCGCGAAACCGACAG
CGAAACCGTGCGCGAAAAACTGCGCGAGTACCAAAATCACCGTGCCTGCCCGAGCTGCGGCGGCGCACGTTTGCGCAAAG
AAGCACGCTACGTTTACGTCGGCGGCGAACCGTTGCACGAAGTCTCCGCCTGGCCGCTGACCAAAACCCACCGATTCTTC
GAAACGCTGGATTTGGACGGCAACAAAAAACAGATCGCCGAAAAAATCCTCAAAGAAATCACCGAGCGGCTCGGCTTCTT
GATTAACGTCGGACTGGATTACCTGAATCTAAGCCGTTCCGCCGAAACCCTTTCCGGCGGCGAAGCCCAGCGCATCCGCC
TTGCCAGCCAAATCGGCAGCGGCCTGACCGGCGTGATGTACGTTTTGGACGAACCCTCCATCGGCCTGCACCAGCGCGAC
AACGACCGCCTGCTCGCCACCCTCAAACGCCTGCGCGATTTGGGCAACAGCGTAATTGTGGTCGAACACGACGAAGACGC
CATCCGCGAAGCCGATTTCGTCGTCGATATGGGCCCCGGCGCGGGCGAACACGGCGGCAACGTACTGATTGCCGACACAC
CCGAAAATGTCGCCAAATGCGAAAAATCCGTTACCGGACAATACCTCGGCGGTAAAAAATCCATTGCCGTGCCGTCTGAA
CGCACGCCCGTCAATCCCGGCCGAATGCTCGTCCTCAAAGGCGCGCGCGGCAACAACCTCAAAAACGTAACCCTCGAGTT
GCCGCTTGGTTTGATTACCTGCATCACCGGCGTATCCGGCAGCGGCAAATCCACCCTGATTAACGACACCCTCGCCAAAA
TCACCGCCCGCGAACTCAACCGCGCCCAAGAAGAGCCCGCCCCATACGACGACATCCGCGGCCTCGAACACCTCGACAAA
GTCATCAACGTCGACCAATCCCCCATCGGCCGCACCCCGCGCTCCAACCCCGCCACCTACACCGGCCTGTTCACCCCCAT
CCGCGAACTCTTCGCCGGCGTACCCCTCTCGCGCGAACGCGGCTACAACGTCGGCAGATTCTCCTTCAACGTCAAAGGCG
GCCGCTGCGAAGCCTGCCAAGGCGACGGCGTAATCAAAGTCGAAATGCACTTCCTGCCCGACGTGTACGTCCCCTGCGAA
GTCTGCCACGGCAAACGCTACAACCGCGAAACCCTCGAAATCCAATACAAAGGCAAAAACATCAGCCAAGTCCTCGACAT
GACGGTCGAAGAAGCCCGCGAATTTTTCGACGCCGTCCCCACCGTATCGCGCAAACTGCAAACCCTGATGGACGTAGGTC
TCGGCTACATCCGCCTCGGCCAATCCGCCACCACCCTCTCCGGCGGCGAAGCCCAGCGCGTCAAACTCGCCTTGGAACTC
TCCAAACGCGACACCGGCAGAACGCTCTACATCCTCGACGAACCCACCACCGGCCTGCACTTCGCCGACATCGCCCTGCT
GCTGGAAGTCATAGGCCGTCTGAAAGGCAAAGGCAACTCGATTGTGATTATCGAGCATAATCTGGATGTAATTAAAACCG
CGGATTGGATTGTGGACTTAGGGCCGGAAGGCGGCGATGGTGGGGGTAAGGTTATCGCGAAAGGTAGCCCTGAACAAGTG
GCTAAAATTAAGGGGAGTTATACTGGGAAGTATTTGAAAGTAGCGTTGAATAAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(169-273)

UvrA DNA-binding domain (UvrA_DNA-bind)

(327-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

59.086

96.217

0.569
  uvrA Streptococcus pneumoniae TIGR4

59.086

96.217

0.569
  uvrA Streptococcus pneumoniae D39

59.086

96.217

0.569