Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5F91_RS02320 Genome accession   NZ_CP145064
Coordinates   451838..452449 (+) Length   203 a.a.
NCBI ID   WP_071197480.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446838..457449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F91_RS02295 (V5F91_02300) - 447208..447789 (-) 582 WP_003698180.1 superoxide dismutase -
  V5F91_RS02300 (V5F91_02305) dnaB 447953..449356 (+) 1404 WP_047917841.1 replicative DNA helicase -
  V5F91_RS02305 (V5F91_02310) pilH 449613..450278 (+) 666 WP_003692819.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F91_RS02310 (V5F91_02315) pilV 450310..450918 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Regulator
  V5F91_RS02315 (V5F91_02320) pilJ 450915..451859 (+) 945 WP_139596014.1 PilW family protein Machinery gene
  V5F91_RS02320 (V5F91_02325) pilK 451838..452449 (+) 612 WP_071197480.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F91_RS02325 (V5F91_02330) pilL 452451..452924 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  V5F91_RS02330 (V5F91_02335) - 452994..453302 (-) 309 WP_010359926.1 AzlD family protein -
  V5F91_RS02335 (V5F91_02340) - 453299..454009 (-) 711 Protein_455 AzlC family ABC transporter permease -
  V5F91_RS02340 (V5F91_02345) dut 454175..454627 (+) 453 WP_003687923.1 dUTP diphosphatase -
  V5F91_RS02345 (V5F91_02350) dapC 454699..455886 (+) 1188 WP_071197481.1 succinyldiaminopimelate transaminase -
  V5F91_RS02350 (V5F91_02355) yaaA 456042..456821 (+) 780 WP_003692836.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22082.06 Da        Isoelectric Point: 8.4486

>NTDB_id=849844 V5F91_RS02320 WP_071197480.1 451838..452449(+) (pilK) [Neisseria gonorrhoeae strain WHO_S_2024]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVKGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=849844 V5F91_RS02320 WP_071197480.1 451838..452449(+) (pilK) [Neisseria gonorrhoeae strain WHO_S_2024]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
TATGATAGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.074

100

0.951