Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G16_RS11195 Genome accession   NZ_CP145062
Coordinates   2136569..2137306 (-) Length   245 a.a.
NCBI ID   WP_050303812.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_T_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2131569..2142306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G16_RS11165 (V5G16_11190) - 2131753..2131974 (-) 222 WP_353105778.1 hypothetical protein -
  V5G16_RS11170 (V5G16_11195) - 2131988..2132710 (-) 723 WP_353105763.1 opacity family porin -
  V5G16_RS11175 (V5G16_11200) - 2133764..2134180 (-) 417 Protein_2163 pilin -
  V5G16_RS11180 (V5G16_11205) lpxC 2134308..2135231 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G16_RS11185 (V5G16_11210) - 2135806..2136165 (-) 360 Protein_2165 pilin -
  V5G16_RS11190 (V5G16_11215) - 2136192..2136542 (-) 351 Protein_2166 pilin -
  V5G16_RS11195 (V5G16_11220) pilE 2136569..2137306 (-) 738 WP_050303812.1 pilin Machinery gene
  V5G16_RS11200 (V5G16_11225) - 2137335..2137703 (-) 369 Protein_2168 pilin -
  V5G16_RS11205 (V5G16_11230) - 2138502..2138627 (+) 126 Protein_2169 IS110 family transposase -
  V5G16_RS11210 (V5G16_11235) - 2139176..2139865 (-) 690 WP_050157270.1 SprT family zinc-dependent metalloprotease -
  V5G16_RS11215 (V5G16_11240) - 2139862..2140605 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  V5G16_RS11220 (V5G16_11245) gmhB 2140635..2141198 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 26683.82 Da        Isoelectric Point: 9.2812

>NTDB_id=849820 V5G16_RS11195 WP_050303812.1 2136569..2137306(-) (pilE) [Neisseria gonorrhoeae strain WHO_T_2024]
MSHHRVLPSAVTEYYPNHGKWPEDNTSAGVASPASNIKGKYVQKVEVNNGVVTATMASSNVNKEIKDKKLSLWAKREDGS
VKWFCGQPVTRANADAAKDDVNAAKDTNKIETKHLPSTCRDESSAGCTKTPEYYLNHGTWPEDNTSAGVASSAEIKGKYV
QKVEVAKGVVTATMKSDGVNKEIKGKKLSLWGRREDGSVKWFCGQPVKRDNAKADNDDVKADAADKDKIETKHLPSTCRD
TSSAK

Nucleotide


Download         Length: 738 bp        

>NTDB_id=849820 V5G16_RS11195 WP_050303812.1 2136569..2137306(-) (pilE) [Neisseria gonorrhoeae strain WHO_T_2024]
ATCAGCCATCACCGGGTATTACCCTCAGCCGTCACCGAATATTACCCGAATCACGGCAAATGGCCGGAAGACAACACTTC
TGCCGGCGTGGCATCCCCCGCCTCCAACATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTTACCG
CCACAATGGCTTCAAGCAACGTAAACAAAGAAATCAAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCG
GTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGCCAACGCCGACGCCGCCAAAGACGACGTCAACGCCGCCAAAGACAC
CAACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCACAAAAACACCCGAATATT
ACCTGAATCACGGCACATGGCCGGAAGACAACACTTCTGCCGGCGTGGCATCCTCCGCCGAAATCAAAGGCAAATATGTT
CAGAAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATCAAAGGCAAAAA
ACTCTCCCTGTGGGGCAGGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACAACGCCAAAG
CCGACAACGACGACGTCAAAGCCGACGCCGCCGACAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGTGAT
ACGTCATCTGCCAAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(9-120)

Pilin (bacterial filament) (Pilin)

(128-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

76.068

47.755

0.363