Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5G16_RS02335 Genome accession   NZ_CP145062
Coordinates   450531..451142 (+) Length   203 a.a.
NCBI ID   WP_071197480.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_T_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445531..456142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G16_RS02310 (V5G16_02315) - 445901..446482 (-) 582 WP_003698180.1 superoxide dismutase -
  V5G16_RS02315 (V5G16_02320) dnaB 446646..448049 (+) 1404 WP_047917841.1 replicative DNA helicase -
  V5G16_RS02320 (V5G16_02325) pilH 448306..448971 (+) 666 WP_003692819.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G16_RS02325 (V5G16_02330) pilV 449003..449611 (+) 609 WP_071197478.1 type IV pilus modification protein PilV Regulator
  V5G16_RS02330 (V5G16_02335) pilJ 449608..450552 (+) 945 WP_071197479.1 PilW family protein Machinery gene
  V5G16_RS02335 (V5G16_02340) pilK 450531..451142 (+) 612 WP_071197480.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G16_RS02340 (V5G16_02345) pilL 451144..451617 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  V5G16_RS02345 (V5G16_02350) - 451687..451995 (-) 309 WP_010359926.1 AzlD family protein -
  V5G16_RS02350 (V5G16_02355) - 451992..452702 (-) 711 Protein_458 AzlC family ABC transporter permease -
  V5G16_RS02355 (V5G16_02360) dut 452868..453320 (+) 453 WP_003687923.1 dUTP diphosphatase -
  V5G16_RS02360 (V5G16_02365) dapC 453392..454579 (+) 1188 WP_071197481.1 succinyldiaminopimelate transaminase -
  V5G16_RS02365 (V5G16_02370) yaaA 454735..455514 (+) 780 WP_003692836.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22082.06 Da        Isoelectric Point: 8.4486

>NTDB_id=849774 V5G16_RS02335 WP_071197480.1 450531..451142(+) (pilK) [Neisseria gonorrhoeae strain WHO_T_2024]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVKGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=849774 V5G16_RS02335 WP_071197480.1 450531..451142(+) (pilK) [Neisseria gonorrhoeae strain WHO_T_2024]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
TATGATAGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.074

100

0.951