Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QSV47_RS04615 Genome accession   NZ_CP128865
Coordinates   1024771..1026570 (-) Length   599 a.a.
NCBI ID   WP_041152406.1    Uniprot ID   -
Organism   Apilactobacillus kunkeei strain S1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019771..1031570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV47_RS04585 (QSV47_04585) - 1020113..1020625 (-) 513 WP_160184495.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  QSV47_RS04590 (QSV47_04590) - 1020640..1021491 (-) 852 WP_301588148.1 methyltransferase domain-containing protein -
  QSV47_RS04595 (QSV47_04595) - 1021587..1022474 (-) 888 WP_041152405.1 RluA family pseudouridine synthase -
  QSV47_RS04600 (QSV47_04600) - 1022467..1023276 (-) 810 WP_034534499.1 NAD kinase -
  QSV47_RS04605 (QSV47_04605) - 1023279..1023911 (-) 633 WP_034534502.1 GTP pyrophosphokinase family protein -
  QSV47_RS04610 (QSV47_04610) - 1024091..1024732 (+) 642 WP_051592213.1 DsbA family protein -
  QSV47_RS04615 (QSV47_04615) pepF 1024771..1026570 (-) 1800 WP_041152406.1 oligoendopeptidase F Regulator
  QSV47_RS04620 (QSV47_04620) - 1026609..1027691 (-) 1083 WP_160185010.1 competence protein CoiA family protein -
  QSV47_RS04625 (QSV47_04625) - 1027758..1028822 (-) 1065 WP_301588154.1 adaptor protein MecA -
  QSV47_RS04630 (QSV47_04630) - 1028883..1029644 (-) 762 WP_160185011.1 MBL fold metallo-hydrolase -
  QSV47_RS04635 (QSV47_04635) - 1029737..1030189 (+) 453 WP_034534508.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69094.12 Da        Isoelectric Point: 4.5946

>NTDB_id=849760 QSV47_RS04615 WP_041152406.1 1024771..1026570(-) (pepF) [Apilactobacillus kunkeei strain S1]
MSEVQQLPKRSEVPEKLTWDLTTIYKTDDDFEADFKECVKEVESVEKLKTNHFDAKTLLSDLKAIEKLERKVEKLYVYSS
LKSDADTSNSEYQSMNARCADLASKASSALAWFEPAVLNISEDNLKKMLVEESELADYTHYFDELFSQKDHILDAEHEKI
LSSLGNIFDTPSNVYGVMTNSDLKFPVVSDEDGNKVELSNGVYSKLLESTDRSVRKEAFQQLYTVYNQFKNTLASTLSGE
LKVHNFRASMRHFSSAKEAALSNNHIDEKVYQQLIDTVNKYLPLLHRYVKLRKKLLSLDEMHMYDLYTPLFGNSPISYNF
DEAKEESIKALSILGDDYIDHIKEEFNNRWIDVVENKGKRSGAYSSGVYDTNPYILLNWQDNLDNLFTLVHESGHSMHSY
YTTHNQPFQYGDYSIFLAEIASTTNENILTDYLLKNTDDVEVKKYVLNHFLDGFKGTIFRQTQFAEFEDFAHQQEQAGNP
LTAKMLSDFYYKLNQRYYGDGVVSDPEIAYEWARIPHFYMNYYVYQYATGFAAAIDLSDGICDNDQEAIDKYIGYLKSGS
SDYPLNVMKKAGIDMTNADYLENAFKVFEERLNELESLI

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=849760 QSV47_RS04615 WP_041152406.1 1024771..1026570(-) (pepF) [Apilactobacillus kunkeei strain S1]
ATGAGTGAAGTACAACAATTACCAAAGAGATCAGAAGTACCAGAAAAATTAACCTGGGACTTAACAACTATTTATAAGAC
AGATGATGACTTTGAAGCGGATTTCAAAGAATGCGTCAAGGAAGTCGAATCCGTGGAAAAGTTAAAGACTAATCATTTTG
ATGCAAAAACACTTTTAAGTGATTTAAAAGCAATCGAAAAACTAGAACGTAAAGTGGAAAAATTATATGTATACTCATCA
TTGAAGAGTGATGCTGATACATCAAATTCTGAATACCAAAGCATGAATGCTAGATGTGCTGATTTAGCATCTAAAGCATC
ATCAGCACTAGCATGGTTTGAACCAGCGGTTTTAAATATTAGTGAAGATAACCTAAAGAAGATGCTAGTTGAAGAATCAG
AATTAGCAGATTACACACACTATTTTGATGAACTATTCAGCCAAAAGGACCATATCCTGGATGCTGAACATGAAAAAATT
CTATCAAGTTTAGGTAACATCTTTGATACCCCTTCAAACGTATACGGTGTAATGACCAATTCCGACTTGAAGTTCCCAGT
GGTATCAGACGAAGATGGTAACAAGGTCGAACTATCAAATGGTGTCTACAGTAAGTTACTTGAATCCACAGACAGAAGTG
TTCGTAAGGAAGCATTCCAACAGTTATACACAGTTTATAACCAATTCAAGAACACATTAGCATCAACACTTTCTGGTGAA
TTGAAGGTGCATAACTTTAGAGCTTCAATGCGTCACTTTAGCTCAGCTAAGGAAGCTGCATTGAGCAATAACCACATCGA
TGAAAAGGTATACCAACAACTAATTGATACGGTTAATAAGTACCTACCTTTATTACATCGTTACGTGAAACTAAGAAAGA
AATTACTTTCATTAGACGAAATGCACATGTATGACTTGTACACACCATTATTCGGTAACTCACCAATCTCATACAATTTT
GATGAAGCCAAGGAAGAATCAATCAAGGCGTTATCAATTCTTGGGGATGATTACATTGATCATATCAAGGAAGAATTTAA
TAATCGTTGGATTGATGTAGTTGAAAATAAGGGAAAGAGAAGTGGGGCATACTCATCAGGAGTATACGACACTAACCCAT
ATATCCTTTTAAACTGGCAAGATAACCTTGATAACTTGTTTACACTGGTTCATGAATCAGGTCACAGTATGCACAGTTAC
TACACAACCCATAATCAACCATTCCAATATGGTGATTACTCAATCTTCTTAGCCGAAATCGCATCAACCACTAACGAAAA
TATCTTAACAGATTATCTTTTGAAGAATACCGATGATGTTGAAGTTAAGAAGTACGTATTAAATCACTTCCTAGATGGTT
TCAAGGGAACTATTTTCAGACAAACTCAATTTGCTGAATTTGAAGACTTTGCTCACCAACAAGAACAAGCTGGTAATCCA
CTAACAGCTAAGATGTTAAGTGATTTCTACTACAAGCTAAACCAACGCTATTATGGTGATGGAGTAGTATCTGATCCAGA
AATTGCATATGAATGGGCTAGAATTCCGCATTTCTACATGAATTACTATGTATATCAATACGCAACTGGTTTTGCAGCCG
CCATTGATTTATCAGATGGCATCTGTGACAACGACCAAGAAGCAATTGATAAGTACATCGGTTACTTAAAATCAGGTAGT
TCTGATTATCCATTAAACGTAATGAAAAAAGCTGGTATTGACATGACTAATGCAGATTACCTAGAAAATGCATTCAAGGT
ATTTGAAGAAAGATTAAACGAATTAGAATCATTAATTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-185)

Peptidase family M3 (Peptidase_M3)

(206-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.1

98.664

0.504