Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QSV47_RS01690 Genome accession   NZ_CP128865
Coordinates   442985..444361 (+) Length   458 a.a.
NCBI ID   WP_301568655.1    Uniprot ID   -
Organism   Apilactobacillus kunkeei strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 437985..449361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV47_RS01665 (QSV47_01665) - 438378..439331 (+) 954 WP_034531882.1 DMT family transporter -
  QSV47_RS01670 (QSV47_01670) - 439346..440014 (+) 669 WP_041152504.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  QSV47_RS01675 (QSV47_01675) - 440051..441391 (-) 1341 WP_057197549.1 C1 family peptidase -
  QSV47_RS01680 (QSV47_01680) rpiA 441498..442187 (-) 690 WP_041152506.1 ribose-5-phosphate isomerase RpiA -
  QSV47_RS01685 (QSV47_01685) - 442421..442957 (+) 537 WP_041152507.1 dUTP diphosphatase -
  QSV47_RS01690 (QSV47_01690) radA 442985..444361 (+) 1377 WP_301568655.1 DNA repair protein RadA Machinery gene
  QSV47_RS01695 (QSV47_01695) - 444383..445474 (+) 1092 WP_052471476.1 PIN domain-containing protein -
  QSV47_RS01700 (QSV47_01700) gltX 445584..447074 (+) 1491 WP_041152508.1 glutamate--tRNA ligase -
  QSV47_RS01705 (QSV47_01705) cysS 447195..448601 (+) 1407 WP_057197551.1 cysteine--tRNA ligase -
  QSV47_RS01710 (QSV47_01710) - 448602..449024 (+) 423 WP_034534704.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49752.94 Da        Isoelectric Point: 6.4050

>NTDB_id=849748 QSV47_RS01690 WP_301568655.1 442985..444361(+) (radA) [Apilactobacillus kunkeei strain S1]
MAKVKTQFVCEECGYISPKYLGHCPNCGKWNTFEEQTVQKETSSLKSTHRMDFNGQQTKPQLIKDVKFEKESRFETESQE
FNRVLGGGIVPGSLILIGGDPGIGKSTLLLQISGQLGAKDQRVLYVSGEESASQIKLRAERLSVNGSNMYLYPETDMGAI
KSAIDEIKPDAVVIDSVQTISEPEVDSAIGSVSQVRAITADLMSIAKTNGITIFVVGHVTKGGSIAGPKTLEHMVDTVLY
FEGDMHHSYRILRAVKNRFGSTDELGIFDMQESGLREVANPSEVFLEERLKDANGSAIVVSIEGTRPILVEIQALVTPSV
FGNAQRTATGIDRNRVAVLMAVIEKRAGLMLQNQDAFLKAAGGVKLNEPAIDLAVAISVASSYKNRGTDPSECYIGEIGL
TGEIRRVNRIEQRVLEAQKLGFKRVLIPKHNMSGWTAPDGIEVVGVSTLAQAIKIALN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=849748 QSV47_RS01690 WP_301568655.1 442985..444361(+) (radA) [Apilactobacillus kunkeei strain S1]
GTGGCTAAAGTAAAGACCCAATTTGTTTGCGAAGAATGTGGATACATTTCACCAAAGTACTTGGGACATTGTCCTAACTG
TGGAAAATGGAACACGTTTGAAGAACAAACCGTTCAAAAAGAAACATCGAGTTTGAAATCGACTCACCGAATGGATTTCA
ATGGTCAGCAAACAAAACCACAACTAATCAAAGACGTTAAGTTCGAAAAGGAATCACGTTTTGAAACTGAATCCCAAGAA
TTTAATCGTGTATTAGGTGGCGGAATTGTTCCGGGCTCATTAATTTTAATTGGTGGTGATCCTGGTATCGGGAAATCCAC
ACTGTTACTTCAAATTTCTGGTCAATTAGGTGCTAAGGACCAACGTGTCCTATATGTATCTGGGGAAGAAAGTGCCAGTC
AAATTAAGCTAAGAGCGGAACGTTTATCCGTGAATGGCTCCAATATGTATCTATATCCAGAAACCGATATGGGTGCCATC
AAGTCTGCCATTGATGAGATTAAACCAGATGCAGTGGTAATTGACTCCGTTCAGACTATTTCTGAACCAGAAGTTGATTC
TGCAATTGGTTCCGTATCACAGGTAAGAGCAATTACCGCTGATTTAATGTCCATTGCAAAGACCAATGGAATTACTATCT
TTGTGGTTGGCCACGTTACCAAGGGTGGTTCAATTGCTGGACCTAAGACTTTGGAACACATGGTTGATACTGTTTTATAC
TTTGAAGGAGACATGCATCATTCCTACCGTATCTTAAGAGCCGTGAAGAACCGTTTTGGTTCAACCGACGAGCTAGGGAT
TTTTGATATGCAAGAATCCGGATTACGTGAAGTTGCTAATCCATCAGAGGTCTTCTTGGAAGAACGTTTGAAGGACGCTA
ATGGTTCTGCAATCGTTGTTTCAATCGAGGGAACTAGACCAATCCTAGTTGAAATTCAGGCACTGGTAACACCATCCGTA
TTTGGGAACGCCCAAAGAACAGCTACCGGGATTGACCGTAACCGTGTAGCCGTTTTAATGGCGGTGATTGAAAAACGTGC
AGGACTAATGCTACAAAATCAAGATGCCTTCTTAAAGGCTGCTGGTGGAGTTAAGTTAAATGAACCAGCAATTGATTTGG
CTGTGGCAATTAGTGTGGCATCAAGTTACAAGAACAGGGGAACAGACCCTAGTGAATGTTACATCGGTGAAATTGGGTTA
ACTGGTGAAATTAGACGAGTTAACCGTATTGAACAACGTGTTTTAGAAGCACAAAAACTGGGCTTTAAGCGCGTATTAAT
ACCAAAACATAATATGTCAGGATGGACTGCTCCAGACGGAATTGAAGTCGTTGGTGTATCCACACTGGCTCAAGCGATAA
AAATCGCACTTAACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

62.996

99.127

0.624
  radA Streptococcus pneumoniae Rx1

62.996

99.127

0.624
  radA Streptococcus pneumoniae D39

62.996

99.127

0.624
  radA Streptococcus pneumoniae R6

62.996

99.127

0.624
  radA Streptococcus pneumoniae TIGR4

62.996

99.127

0.624
  radA Streptococcus mitis SK321

62.996

99.127

0.624
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

99.782

0.614