Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSR66_RS16675 Genome accession   NZ_CP128834
Coordinates   3719722..3720357 (-) Length   211 a.a.
NCBI ID   WP_009047817.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain PcR3-3(2)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3714722..3725357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR66_RS16640 (PSR66_16640) - 3715118..3715588 (-) 471 WP_016702177.1 (2Fe-2S)-binding protein -
  PSR66_RS16645 (PSR66_16645) murB 3715837..3716856 (-) 1020 WP_009047822.1 UDP-N-acetylmuramate dehydrogenase -
  PSR66_RS16650 (PSR66_16650) - 3716853..3717317 (-) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  PSR66_RS16655 (PSR66_16655) kdsB 3717317..3718081 (-) 765 WP_016702178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSR66_RS16660 (PSR66_16660) - 3718078..3718263 (-) 186 WP_007931663.1 Trm112 family protein -
  PSR66_RS16665 (PSR66_16665) lpxK 3718287..3719297 (-) 1011 WP_273863591.1 tetraacyldisaccharide 4'-kinase -
  PSR66_RS16670 (PSR66_16670) - 3719297..3719725 (-) 429 WP_009047818.1 biopolymer transporter ExbD -
  PSR66_RS16675 (PSR66_16675) exbB 3719722..3720357 (-) 636 WP_009047817.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSR66_RS16680 (PSR66_16680) comA 3720460..3722691 (-) 2232 WP_273863589.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSR66_RS16685 (PSR66_16685) - 3722840..3723355 (+) 516 WP_009047815.1 DUF2062 domain-containing protein -
  PSR66_RS16690 (PSR66_16690) - 3723404..3724183 (-) 780 WP_007931651.1 ABC transporter permease -
  PSR66_RS16695 (PSR66_16695) - 3724180..3725112 (-) 933 WP_009047814.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22932.11 Da        Isoelectric Point: 7.4247

>NTDB_id=849693 PSR66_RS16675 WP_009047817.1 3719722..3720357(-) (exbB) [Pseudomonas chlororaphis strain PcR3-3(2)]
MWELVISGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=849693 PSR66_RS16675 WP_009047817.1 3719722..3720357(-) (exbB) [Pseudomonas chlororaphis strain PcR3-3(2)]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCACATCTGTTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863