Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QVH08_RS11655 Genome accession   NZ_CP128832
Coordinates   2382553..2383506 (-) Length   317 a.a.
NCBI ID   WP_033127883.1    Uniprot ID   -
Organism   Clostridium butyricum strain DKU-11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2377553..2388506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVH08_RS11635 (QVH08_11635) tyrS 2377757..2378962 (-) 1206 WP_035789701.1 tyrosine--tRNA ligase -
  QVH08_RS11640 (QVH08_11640) - 2379755..2380693 (-) 939 WP_035762894.1 siderophore ABC transporter substrate-binding protein -
  QVH08_RS11645 (QVH08_11645) - 2380771..2381526 (-) 756 WP_035762895.1 ATP-binding cassette domain-containing protein -
  QVH08_RS11650 (QVH08_11650) - 2381607..2382563 (-) 957 WP_043852785.1 iron chelate uptake ABC transporter family permease subunit -
  QVH08_RS11655 (QVH08_11655) ceuB 2382553..2383506 (-) 954 WP_033127883.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  QVH08_RS11660 (QVH08_11660) - 2383841..2384149 (-) 309 WP_035762897.1 hypothetical protein -
  QVH08_RS11665 (QVH08_11665) - 2384215..2385714 (-) 1500 WP_043852783.1 sodium:solute symporter family protein -
  QVH08_RS11670 (QVH08_11670) - 2385764..2386717 (-) 954 WP_002579993.1 L-lactate dehydrogenase -
  QVH08_RS11675 (QVH08_11675) - 2386974..2387471 (-) 498 WP_035762898.1 hypothetical protein -
  QVH08_RS11680 (QVH08_11680) - 2387707..2388387 (+) 681 WP_002579991.1 TIGR00266 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34523.82 Da        Isoelectric Point: 10.0188

>NTDB_id=849682 QVH08_RS11655 WP_033127883.1 2382553..2383506(-) (ceuB) [Clostridium butyricum strain DKU-11]
MSKKILIPMFIILCIISLFIGVNDISVMDIINFDSEKINILLISRLPRLVGLVVAGVGMSIGGVIMQQISNNKFVSPTTA
ATLDSAQFGVIVAMMIFPVASLTQKMIVAFIFSLIGTFLFMGILKKIKMKNAIFIPLVGIMVGNVIGSLTEFIAYKNNLV
QNVGSFFQGKFALVIKGNYEMLYFTIPLLIVAFMYANKFTIIGMGEDISKNLGLDYKKVSNIGITIVALVSALVIITVGN
IPFIGLIVPNLVSLFNGDNVSKNIGITALFGANFVILCDIIGRLVIYPYEVSISLTVGVIGSIIFLYLILRRNRNEA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=849682 QVH08_RS11655 WP_033127883.1 2382553..2383506(-) (ceuB) [Clostridium butyricum strain DKU-11]
ATGAGTAAAAAAATATTAATACCGATGTTTATTATATTGTGTATAATTTCACTGTTCATTGGAGTGAACGACATATCAGT
AATGGATATAATAAACTTTGATAGTGAGAAAATAAATATTTTATTGATAAGCAGATTACCAAGACTTGTTGGGCTTGTTG
TTGCTGGTGTTGGAATGAGTATCGGTGGAGTGATAATGCAGCAGATAAGTAACAACAAATTTGTATCACCCACAACAGCA
GCAACTCTTGATTCAGCACAATTTGGTGTAATTGTAGCTATGATGATTTTCCCAGTTGCATCTTTAACGCAAAAGATGAT
TGTAGCCTTTATATTTTCACTTATAGGAACATTTTTATTTATGGGAATTCTAAAAAAGATAAAGATGAAAAATGCCATAT
TCATACCACTTGTAGGGATTATGGTTGGAAATGTTATCGGATCACTTACAGAGTTTATAGCCTATAAGAATAACCTTGTT
CAAAATGTGGGATCTTTCTTTCAAGGTAAATTTGCACTTGTGATTAAAGGAAATTATGAAATGCTATATTTCACTATTCC
TTTGCTTATAGTGGCATTTATGTATGCAAACAAATTTACAATAATAGGTATGGGAGAAGATATTTCAAAAAATCTAGGTC
TTGATTATAAGAAAGTCAGTAATATTGGAATTACCATAGTGGCATTAGTTAGTGCACTGGTTATTATAACAGTAGGTAAT
ATACCATTTATAGGTTTAATTGTTCCAAATTTAGTATCACTTTTTAATGGAGATAATGTAAGTAAAAATATAGGAATTAC
AGCTTTGTTTGGAGCAAATTTTGTGATTTTATGTGACATAATTGGTAGACTTGTAATTTATCCATATGAGGTTTCAATAA
GTCTTACTGTAGGAGTTATAGGAAGTATAATATTCCTTTATTTAATATTAAGGAGAAATAGAAATGAAGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.882

98.738

0.483