Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   QU579_RS21925 Genome accession   NZ_CP128804
Coordinates   1406043..1407224 (+) Length   393 a.a.
NCBI ID   WP_020835144.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1401043..1412224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS21910 (QU579_22135) - 1401316..1403538 (+) 2223 WP_342821045.1 collagenase -
  QU579_RS21915 (QU579_22140) - 1403718..1404455 (+) 738 WP_031419625.1 EAL domain-containing protein -
  QU579_RS21920 (QU579_22145) ylqF 1404744..1405688 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  QU579_RS21925 (QU579_22150) cqsA 1406043..1407224 (+) 1182 WP_020835144.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QU579_RS21930 (QU579_22155) cqsS 1407302..1409350 (-) 2049 WP_342820901.1 response regulator Regulator
  QU579_RS21935 (QU579_22160) - 1409670..1410287 (+) 618 WP_005481262.1 HAD family phosphatase -
  QU579_RS21940 (QU579_22165) - 1410374..1410922 (-) 549 WP_005486527.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43766.10 Da        Isoelectric Point: 6.6123

>NTDB_id=849670 QU579_RS21925 WP_020835144.1 1406043..1407224(+) (cqsA) [Vibrio parahaemolyticus strain NJIFDCVp52]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERGVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=849670 QU579_RS21925 WP_020835144.1 1406043..1407224(+) (cqsA) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCACTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCCGCCTTTGAGCACCAGCTGGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGCGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGGCGTTTTCGGTGC
GGTGTTTTGTCGACCGGCCACGGGCAGAAATAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.915

98.473

0.58