Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   QU579_RS19580 Genome accession   NZ_CP128804
Coordinates   872229..873326 (+) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 867229..878326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS19550 (QU579_19785) - 867365..868342 (+) 978 WP_015313433.1 Gfo/Idh/MocA family protein -
  QU579_RS19555 (QU579_19790) - 868416..869753 (-) 1338 WP_029856487.1 MATE family efflux transporter -
  QU579_RS19560 (QU579_19795) - 869876..870190 (-) 315 WP_005453573.1 DUF496 family protein -
  QU579_RS19565 (QU579_19800) - 870518..870733 (+) 216 WP_005477197.1 hypothetical protein -
  QU579_RS19570 (QU579_19805) - 870910..871560 (+) 651 WP_017447360.1 YceH family protein -
  QU579_RS19575 (QU579_19810) - 871557..871877 (+) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  QU579_RS19580 (QU579_19815) luxP 872229..873326 (+) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  QU579_RS19585 (QU579_19820) luxQ 873326..875902 (+) 2577 WP_029856486.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  QU579_RS19590 (QU579_19825) - 876114..876569 (+) 456 WP_005477342.1 MarR family transcriptional regulator -
  QU579_RS19595 (QU579_19830) - 876607..877662 (+) 1056 WP_015313427.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=849668 QU579_RS19580 WP_005463467.1 872229..873326(+) (luxP) [Vibrio parahaemolyticus strain NJIFDCVp52]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=849668 QU579_RS19580 WP_005463467.1 872229..873326(+) (luxP) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCTTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGAGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCATCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAGTACCCAGATGTCGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
CTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644