Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   QU579_RS09130 Genome accession   NZ_CP128803
Coordinates   1987944..1989365 (+) Length   473 a.a.
NCBI ID   WP_021449193.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1982944..1994365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS09110 (QU579_09350) - 1983003..1983755 (-) 753 WP_031776489.1 adenosylcobinamide-GDP ribazoletransferase -
  QU579_RS09115 (QU579_09355) cobT 1983800..1984843 (-) 1044 WP_021453099.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  QU579_RS09120 (QU579_09360) - 1985527..1986222 (+) 696 WP_276465790.1 NAD(P)H-binding protein -
  QU579_RS09125 (QU579_09365) - 1986415..1987788 (+) 1374 WP_108744953.1 L-cystine transporter -
  QU579_RS09130 (QU579_09370) sbcB 1987944..1989365 (+) 1422 WP_021449193.1 exodeoxyribonuclease I Machinery gene
  QU579_RS09135 (QU579_09375) - 1989421..1989795 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  QU579_RS09140 (QU579_09380) - 1989797..1990474 (+) 678 WP_005454891.1 LrgB family protein -
  QU579_RS09145 (QU579_09385) cdd 1990839..1991726 (+) 888 WP_015296604.1 cytidine deaminase -
  QU579_RS09150 (QU579_09390) purT 1991874..1993049 (+) 1176 WP_005495504.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  QU579_RS09155 (QU579_09395) tnpA 1993177..1993638 (-) 462 WP_005498820.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54645.97 Da        Isoelectric Point: 4.9813

>NTDB_id=849650 QU579_RS09130 WP_021449193.1 1987944..1989365(+) (sbcB) [Vibrio parahaemolyticus strain NJIFDCVp52]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=849650 QU579_RS09130 WP_021449193.1 1987944..1989365(+) (sbcB) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAGCTGTTTGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCGCCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATCTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGCGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799