Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QU579_RS02960 Genome accession   NZ_CP128803
Coordinates   608912..609430 (+) Length   172 a.a.
NCBI ID   WP_025508497.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 603912..614430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS02950 (QU579_02950) gshA 606647..608215 (+) 1569 WP_342821215.1 glutamate--cysteine ligase -
  QU579_RS02955 (QU579_02955) - 608240..608845 (+) 606 WP_005484861.1 hypothetical protein -
  QU579_RS02960 (QU579_02960) luxS 608912..609430 (+) 519 WP_025508497.1 S-ribosylhomocysteine lyase Regulator
  QU579_RS02965 (QU579_02965) - 609491..610771 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  QU579_RS02970 (QU579_02970) - 610897..611691 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  QU579_RS02975 (QU579_02975) ffh 611904..613286 (+) 1383 WP_005462555.1 signal recognition particle protein -
  QU579_RS02980 (QU579_02980) rpsP 613496..613744 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  QU579_RS02985 (QU579_02985) rimM 613773..614321 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19006.71 Da        Isoelectric Point: 4.7134

>NTDB_id=849641 QU579_RS02960 WP_025508497.1 608912..609430(+) (luxS) [Vibrio parahaemolyticus strain NJIFDCVp52]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKSILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=849641 QU579_RS02960 WP_025508497.1 608912..609430(+) (luxS) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGCCTTTACTTGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACTATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAGCATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTACCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878