Detailed information NTG0849638

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QU579_RS02830
• Genome accession: NZ_CP128803
• Coordinates: 586326..587315 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain NJIFDCVp52
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 581326..592315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QU579_RS02795 (QU579_02795)	ftsB	581334..581615 (+)	282	WP_005455577.1	cell division protein FtsB	-
QU579_RS02800 (QU579_02800)	ispD	581617..582321 (+)	705	WP_029856510.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QU579_RS02805 (QU579_02805)	ispF	582339..582815 (+)	477	WP_029856509.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QU579_RS02810 (QU579_02810)	truD	582862..583905 (+)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
QU579_RS02815 (QU579_02815)	surE	583905..584681 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
QU579_RS02820 (QU579_02820)	-	584681..585307 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QU579_RS02825 (QU579_02825)	-	585322..586245 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
QU579_RS02830 (QU579_02830)	rpoS	586326..587315 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
QU579_RS02835 (QU579_02835)	mutS	587395..589956 (-)	2562	WP_029856507.1	DNA mismatch repair protein MutS	-
QU579_RS02840 (QU579_02840)	pncC	590041..590523 (+)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
QU579_RS02845 (QU579_02845)	recA	590724..591767 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=849638 QU579_RS02830 WP_005478537.1 586326..587315(+) (rpoS) [Vibrio parahaemolyticus strain NJIFDCVp52]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=849638 QU579_RS02830 WP_005478537.1 586326..587315(+) (rpoS) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTTTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAC
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851