Detailed information NTG0084963

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: QUE42_RS22350
• Genome accession: NZ_AP027212
• Coordinates: 4514926..4515951 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644909.1
• Uniprot ID: -
• Organism: Escherichia coli strain JNE131328
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4509926..4520951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUE42_RS22320 (JNE131328_42660)	zapB	4510043..4510288 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
QUE42_RS22325 (JNE131328_42670)	rraA	4510373..4510858 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
QUE42_RS22330 (JNE131328_42680)	menA	4510951..4511877 (-)	927	WP_001307494.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
QUE42_RS22335 (JNE131328_42690)	hslU	4511944..4513275 (-)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
QUE42_RS22340 (JNE131328_42700)	hslV	4513285..4513815 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
QUE42_RS22345 (JNE131328_42710)	ftsN	4513908..4514834 (-)	927	WP_000068826.1	cell division protein FtsN	-
QUE42_RS22350 (JNE131328_42720)	cytR	4514926..4515951 (-)	1026	WP_000644909.1	DNA-binding transcriptional regulator CytR	Regulator
QUE42_RS22355 (JNE131328_42730)	priA	4516107..4518305 (-)	2199	WP_001315935.1	primosomal protein N'	Machinery gene
QUE42_RS22360 (JNE131328_42740)	rpmE	4518508..4518720 (+)	213	WP_000710769.1	50S ribosomal protein L31	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37771.74 Da
• Isoelectric Point: 6.3842

>NTDB_id=84963 QUE42_RS22350 WP_000644909.1 4514926..4515951(-) (cytR) [Escherichia coli strain JNE131328]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTVEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=84963 QUE42_RS22350 WP_000644909.1 4514926..4515951(-) (cytR) [Escherichia coli strain JNE131328]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTATCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCGTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625