Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QU593_RS19975 Genome accession   NZ_CP128801
Coordinates   3825718..3826668 (-) Length   316 a.a.
NCBI ID   WP_290032729.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain SRCM125375     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3820718..3831668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU593_RS19955 (QU593_19955) - 3821562..3822656 (-) 1095 WP_079514774.1 carbohydrate kinase -
  QU593_RS19960 (QU593_19960) - 3823053..3823988 (-) 936 WP_056533026.1 siderophore ABC transporter substrate-binding protein -
  QU593_RS19965 (QU593_19965) - 3824017..3824778 (-) 762 WP_290031565.1 ATP-binding cassette domain-containing protein -
  QU593_RS19970 (QU593_19970) - 3824775..3825725 (-) 951 WP_056533021.1 iron chelate uptake ABC transporter family permease subunit -
  QU593_RS19975 (QU593_19975) ceuB 3825718..3826668 (-) 951 WP_290032729.1 ABC transporter permease Machinery gene
  QU593_RS19980 (QU593_19980) - 3828060..3829451 (-) 1392 WP_290031566.1 sodium:alanine symporter family protein -
  QU593_RS19985 (QU593_19985) - 3829581..3829757 (-) 177 WP_159645440.1 hypothetical protein -
  QU593_RS19990 (QU593_19990) motB 3829931..3830722 (-) 792 WP_056533015.1 flagellar motor protein MotB -
  QU593_RS19995 (QU593_19995) motA 3830709..3831500 (-) 792 WP_056533013.1 flagellar motor stator protein MotA -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34624.85 Da        Isoelectric Point: 10.0592

>NTDB_id=849619 QU593_RS19975 WP_290032729.1 3825718..3826668(-) (ceuB) [Rossellomorea marisflavi strain SRCM125375]
MKKRYLLILLILLSALSLFVGVSSISPADLLSGRTDEVEVFLVSRLPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTMDATRLGILVSMIIFVEASTMEKLLVAFAFAMAGTFLFMQILDRIKFKDAVFIPLVGLMLGNVLSSVTTFFAYKANLI
QNMSSWLQGDFSLIMKGRYELLYISVPVIILAYLFANRFTVAGMGEEFSKNLGMSYRSIVNIGLILTSLVTVTVILTVGM
IPFLGLIVPNIVSLFKGDHLQRTLPHTAIVGAIFLLVCDILGRIIIFPYEISISLIVGVIGSAIFLYMLLRRKGYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=849619 QU593_RS19975 WP_290032729.1 3825718..3826668(-) (ceuB) [Rossellomorea marisflavi strain SRCM125375]
CTGAAAAAAAGATATTTATTGATTTTACTGATCCTCCTCTCAGCCCTTTCTTTATTCGTTGGGGTGAGCAGCATCTCGCC
GGCGGATTTACTCAGTGGAAGGACGGATGAGGTGGAGGTGTTCCTGGTCAGCAGGCTGCCGAGGCTTGTGGCAATCCTAC
TGGCAGGAGCGGGGATGAGCATTGCCGGCCTCATCATGCAGAGCCTGAGCCGGAATAAGTTTGTATCTCCGACCACGGCG
GGGACGATGGATGCGACAAGGCTCGGGATCCTTGTATCGATGATCATTTTCGTCGAGGCATCCACGATGGAGAAGCTTCT
TGTGGCGTTTGCTTTTGCCATGGCGGGTACATTCCTGTTCATGCAGATCCTCGACCGGATCAAGTTCAAAGATGCTGTCT
TCATTCCCTTGGTGGGGCTGATGCTCGGGAATGTCCTGTCGTCTGTCACGACATTTTTTGCCTACAAGGCGAATCTCATC
CAGAATATGTCTTCATGGCTGCAGGGGGATTTCTCCCTCATCATGAAGGGAAGATACGAGCTTTTATACATAAGTGTACC
GGTCATCATACTTGCCTATCTCTTCGCCAATCGCTTTACGGTTGCGGGAATGGGAGAGGAGTTTTCGAAGAATCTGGGGA
TGTCCTACAGAAGTATCGTGAACATCGGGTTGATACTTACATCACTCGTGACGGTAACCGTGATTTTGACCGTGGGGATG
ATCCCCTTCCTCGGGCTCATCGTCCCGAATATCGTGTCCCTTTTCAAAGGGGATCACCTCCAGAGAACGCTGCCTCACAC
GGCCATCGTGGGAGCGATCTTTCTTCTAGTTTGCGATATCCTCGGGAGGATCATTATCTTCCCTTATGAAATCTCCATCA
GCCTGATAGTCGGGGTCATCGGAAGTGCAATCTTCCTCTACATGCTTTTAAGGAGGAAGGGATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.757

99.051

0.513