Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F99_RS10695 Genome accession   NZ_CP145053
Coordinates   2048336..2048479 (-) Length   47 a.a.
NCBI ID   WP_134921400.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_beta_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2043336..2053479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F99_RS10680 (V5F99_10710) pilA 2044759..2046012 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  V5F99_RS10685 (V5F99_10715) - 2046283..2047116 (-) 834 WP_353165245.1 opacity family porin -
  V5F99_RS10690 (V5F99_10720) - 2047456..2047967 (-) 512 Protein_2066 pilin -
  V5F99_RS10695 (V5F99_10725) pilE 2048336..2048479 (-) 144 WP_134921400.1 large pilS cassette protein Machinery gene
  V5F99_RS10700 (V5F99_10730) - 2048782..2048900 (-) 119 Protein_2068 pilin -
  V5F99_RS10705 (V5F99_10735) - 2049023..2049349 (-) 327 Protein_2069 pilin -
  V5F99_RS10710 (V5F99_10740) - 2049410..2049811 (-) 402 Protein_2070 pilin -
  V5F99_RS10715 (V5F99_10745) lpxC 2049940..2050863 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5F99_RS10720 (V5F99_10755) - 2051318..2051677 (-) 360 Protein_2072 pilin -
  V5F99_RS10725 (V5F99_10760) - 2051717..2052058 (-) 342 Protein_2073 pilin -
  V5F99_RS10730 (V5F99_10765) - 2052111..2052497 (-) 387 Protein_2074 pilin -
  V5F99_RS10735 (V5F99_10770) - 2052631..2053077 (-) 447 Protein_2075 pilin -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5062.60 Da        Isoelectric Point: 7.2429

>NTDB_id=849601 V5F99_RS10695 WP_134921400.1 2048336..2048479(-) (pilE) [Neisseria gonorrhoeae strain WHO_beta_2024]
MTGFNDAAGNEKIDTKHLPSTCRDKSTAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=849601 V5F99_RS10695 WP_134921400.1 2048336..2048479(-) (pilE) [Neisseria gonorrhoeae strain WHO_beta_2024]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCAAC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

66.667

63.83

0.426