Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QU593_RS08035 Genome accession   NZ_CP128801
Coordinates   1611904..1612947 (+) Length   347 a.a.
NCBI ID   WP_079516374.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain SRCM125375     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1606904..1617947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU593_RS08010 (QU593_08010) - 1607131..1608333 (+) 1203 WP_290032285.1 substrate-binding domain-containing protein -
  QU593_RS08015 (QU593_08015) - 1608393..1609166 (+) 774 WP_079516376.1 ABC transporter ATP-binding protein -
  QU593_RS08020 (QU593_08020) - 1609144..1609848 (+) 705 WP_056535389.1 ABC transporter ATP-binding protein -
  QU593_RS08025 (QU593_08025) - 1609871..1610743 (+) 873 WP_056535391.1 branched-chain amino acid ABC transporter permease -
  QU593_RS08030 (QU593_08030) - 1610800..1611735 (+) 936 WP_286188266.1 branched-chain amino acid ABC transporter permease -
  QU593_RS08035 (QU593_08035) comGA 1611904..1612947 (+) 1044 WP_079516374.1 competence type IV pilus ATPase ComGA Machinery gene
  QU593_RS08040 (QU593_08040) comGB 1612898..1613953 (+) 1056 WP_148984549.1 competence type IV pilus assembly protein ComGB -
  QU593_RS08045 (QU593_08045) comGC 1613950..1614294 (+) 345 WP_056535408.1 competence type IV pilus major pilin ComGC -
  QU593_RS08050 (QU593_08050) comGD 1614296..1614727 (+) 432 WP_056535409.1 competence type IV pilus minor pilin ComGD -
  QU593_RS08055 (QU593_08055) - 1614711..1615028 (+) 318 WP_290032286.1 hypothetical protein -
  QU593_RS08060 (QU593_08060) comGF 1614994..1615437 (+) 444 WP_290032287.1 competence type IV pilus minor pilin ComGF -
  QU593_RS08065 (QU593_08065) - 1615427..1615783 (+) 357 WP_056535413.1 hypothetical protein -
  QU593_RS08070 (QU593_08070) - 1615787..1616287 (+) 501 WP_056535415.1 shikimate kinase -
  QU593_RS08075 (QU593_08075) - 1616333..1616518 (+) 186 WP_053427748.1 YqzE family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39154.63 Da        Isoelectric Point: 9.3873

>NTDB_id=849596 QU593_RS08035 WP_079516374.1 1611904..1612947(+) (comGA) [Rossellomorea marisflavi strain SRCM125375]
MISEAFRSHATDVHLVPRKNDYLIQFRKLGTLVPFKTIDEDQAERLIAHLKFMSSMDIAEKRKPQSGSYTHFISRIPLAL
RVSTLPTTHLKESLVIRILPERYQIPIEHMSLYPSSAKKLVALLMHSHGLILFTGPTGSGKTTTLYSLVHHCAVSLNRNV
ITLEDPVEKAHEEMVQIQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDKETAEIAVRAALTGHLVLSSVHTRDAKGAIY
RLMELGIKWHDIEQTILAVSAQRLLRLKCPVCGNDCFGECLAEGKRTNRATVFEILTGKELKNVLMEAKGDKVDHRYLTL
KQLIRKGVALGYVPESEYRKWIHEEKG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=849596 QU593_RS08035 WP_079516374.1 1611904..1612947(+) (comGA) [Rossellomorea marisflavi strain SRCM125375]
ATGATTTCGGAAGCATTTCGCAGTCATGCAACAGATGTCCATCTCGTCCCCCGAAAGAACGATTACCTCATTCAGTTCAG
AAAGCTCGGAACACTCGTCCCCTTCAAGACGATCGACGAAGACCAGGCCGAGCGCCTCATCGCCCATCTGAAGTTCATGT
CCTCTATGGATATCGCAGAGAAGCGAAAGCCCCAAAGCGGCTCCTACACTCATTTCATCTCACGGATCCCCCTGGCACTG
CGGGTATCCACCCTTCCGACCACCCATCTCAAAGAAAGCCTCGTCATCCGGATCCTCCCTGAACGCTATCAAATCCCCAT
CGAGCACATGTCCCTCTACCCGTCATCAGCTAAAAAACTCGTCGCCCTGCTCATGCACTCCCACGGTCTTATTCTATTTA
CCGGACCGACAGGCAGCGGGAAGACGACCACCCTTTACTCCCTTGTCCACCATTGTGCCGTTTCCCTCAACCGCAACGTC
ATCACTTTAGAAGATCCTGTTGAGAAGGCCCACGAAGAAATGGTCCAAATCCAGGTGAATGAAAAGGCAGGCATCACGTA
TTCGACCGGTCTTAAAGCGATTCTCCGCCATGATCCGGATATCATCATGGTCGGGGAGATCCGGGATAAAGAAACCGCTG
AGATTGCCGTCAGGGCAGCCCTCACTGGACATCTCGTCCTCTCATCTGTCCATACGCGGGATGCGAAGGGTGCCATCTAC
CGGCTCATGGAGCTCGGGATCAAATGGCATGATATCGAACAGACCATTTTGGCGGTTTCTGCCCAAAGGCTGCTTCGATT
GAAATGTCCGGTATGCGGAAATGATTGCTTCGGGGAATGCCTCGCTGAAGGGAAGAGGACCAACCGGGCTACGGTTTTCG
AGATCCTGACGGGCAAAGAGCTGAAGAATGTGCTGATGGAAGCAAAGGGTGATAAGGTCGACCATCGATACCTGACGCTG
AAACAGCTCATCCGGAAGGGGGTGGCCCTCGGATATGTTCCGGAATCTGAGTATCGGAAATGGATACATGAAGAAAAGGG
ATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(1-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.043

100

0.55