Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   QUE42_RS21220 Genome accession   NZ_AP027212
Coordinates   4297277..4298269 (+) Length   330 a.a.
NCBI ID   WP_286333995.1    Uniprot ID   -
Organism   Escherichia coli strain JNE131328     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4292277..4303269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE42_RS21195 (JNE131328_40630) rbsD 4292401..4292820 (+) 420 WP_000715936.1 D-ribose pyranase -
  QUE42_RS21200 (JNE131328_40640) rbsA 4292828..4294333 (+) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  QUE42_RS21205 (JNE131328_40650) rbsC 4294338..4295303 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  QUE42_RS21210 (JNE131328_40660) rbsB 4295328..4296218 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  QUE42_RS21215 (JNE131328_40670) rbsK 4296344..4297273 (+) 930 WP_001300603.1 ribokinase -
  QUE42_RS21220 (JNE131328_40680) cytR 4297277..4298269 (+) 993 WP_286333995.1 ribose operon transcriptional repressor RbsR Regulator
  QUE42_RS21225 (JNE131328_40690) mdtD 4298235..4299662 (-) 1428 WP_001280864.1 multidrug transporter subunit MdtD -
  QUE42_RS21230 (JNE131328_40700) yieP 4299685..4300377 (-) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36585.82 Da        Isoelectric Point: 5.2141

>NTDB_id=84955 QUE42_RS21220 WP_286333995.1 4297277..4298269(+) (cytR) [Escherichia coli strain JNE131328]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAISAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSEQVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=84955 QUE42_RS21220 WP_286333995.1 4297277..4298269(+) (cytR) [Escherichia coli strain JNE131328]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTTCCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACAGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment