Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRA04_RS27190 Genome accession   NZ_CP128608
Coordinates   5291649..5291933 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus tropicus strain PUMB_55     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5286649..5296933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA04_RS27175 (QRA04_27120) rnmV 5287440..5287997 (-) 558 WP_000692830.1 ribonuclease M5 -
  QRA04_RS27180 (QRA04_27125) - 5288214..5288981 (-) 768 WP_000895831.1 TatD family hydrolase -
  QRA04_RS27185 (QRA04_27130) metG 5289148..5291130 (-) 1983 WP_000134149.1 methionine--tRNA ligase -
  QRA04_RS27190 (QRA04_27135) abrB 5291649..5291933 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRA04_RS27195 (QRA04_27140) rsmI 5291954..5292829 (-) 876 WP_226641270.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QRA04_RS27200 (QRA04_27145) - 5292798..5293088 (-) 291 WP_139869781.1 GIY-YIG nuclease family protein -
  QRA04_RS27205 (QRA04_27150) - 5293075..5293815 (-) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QRA04_RS27210 (QRA04_27155) yabA 5293936..5294286 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  QRA04_RS27215 (QRA04_27160) - 5294301..5295128 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  QRA04_RS27220 (QRA04_27165) holB 5295134..5296117 (-) 984 WP_242276744.1 DNA polymerase III subunit delta' -
  QRA04_RS27225 (QRA04_27170) tmk 5296153..5296779 (-) 627 WP_000677229.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=849307 QRA04_RS27190 WP_000843036.1 5291649..5291933(+) (abrB) [Bacillus tropicus strain PUMB_55]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=849307 QRA04_RS27190 WP_000843036.1 5291649..5291933(+) (abrB) [Bacillus tropicus strain PUMB_55]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851