Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QRA04_RS20900 Genome accession   NZ_CP128608
Coordinates   4064408..4064731 (+) Length   107 a.a.
NCBI ID   WP_000578880.1    Uniprot ID   A0A2A7DD22
Organism   Bacillus tropicus strain PUMB_55     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4059408..4069731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA04_RS20885 (QRA04_20855) - 4059923..4061290 (-) 1368 WP_001027467.1 aldehyde dehydrogenase -
  QRA04_RS20890 (QRA04_20860) inhA1 4061463..4063850 (-) 2388 WP_226640048.1 M6 family metalloprotease immune inhibitor InhA1 -
  QRA04_RS20895 (QRA04_20865) - 4064194..4064328 (+) 135 WP_000276217.1 anti-repressor SinI family protein -
  QRA04_RS20900 (QRA04_20870) sinR 4064408..4064731 (+) 324 WP_000578880.1 helix-turn-helix domain-containing protein Regulator
  QRA04_RS20905 (QRA04_20875) calY 4064808..4065401 (-) 594 WP_000053729.1 biofilm matrix protein CalY -
  QRA04_RS20910 (QRA04_20880) - 4065833..4066606 (-) 774 WP_242229288.1 DUF4047 domain-containing protein -
  QRA04_RS20915 (QRA04_20885) - 4066768..4067355 (-) 588 WP_000172849.1 CalY family protein -
  QRA04_RS20920 (QRA04_20890) sipW 4067418..4067987 (-) 570 WP_001973051.1 signal peptidase I SipW -
  QRA04_RS20925 (QRA04_20895) - 4068180..4069466 (-) 1287 WP_000247010.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12386.21 Da        Isoelectric Point: 8.5614

>NTDB_id=849292 QRA04_RS20900 WP_000578880.1 4064408..4064731(+) (sinR) [Bacillus tropicus strain PUMB_55]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=849292 QRA04_RS20900 WP_000578880.1 4064408..4064731(+) (sinR) [Bacillus tropicus strain PUMB_55]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCCGGCGTCTCCAAAGAACAGTTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692