Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRA04_RS17305 Genome accession   NZ_CP128608
Coordinates   3341695..3341982 (-) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus tropicus strain PUMB_55     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3336695..3346982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA04_RS17285 (QRA04_17250) - 3337303..3338238 (-) 936 WP_074569801.1 aldo/keto reductase -
  QRA04_RS17290 (QRA04_17255) - 3338347..3338655 (+) 309 WP_001259894.1 ArsR/SmtB family transcription factor -
  QRA04_RS17295 (QRA04_17260) galT 3338769..3340259 (-) 1491 WP_074569802.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  QRA04_RS17300 (QRA04_17265) - 3340471..3341421 (-) 951 WP_001089038.1 serine protease -
  QRA04_RS17305 (QRA04_17270) abrB 3341695..3341982 (-) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRA04_RS17310 (QRA04_17275) - 3342098..3343978 (-) 1881 WP_074569803.1 ABC transporter permease -
  QRA04_RS17315 (QRA04_17280) nadE 3344250..3345068 (+) 819 WP_000174883.1 ammonia-dependent NAD(+) synthetase -
  QRA04_RS17320 (QRA04_17285) - 3345114..3345575 (-) 462 WP_000024988.1 NUDIX hydrolase -
  QRA04_RS17325 (QRA04_17290) - 3345599..3345796 (-) 198 WP_088297523.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=849289 QRA04_RS17305 WP_000648330.1 3341695..3341982(-) (abrB) [Bacillus tropicus strain PUMB_55]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=849289 QRA04_RS17305 WP_000648330.1 3341695..3341982(-) (abrB) [Bacillus tropicus strain PUMB_55]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516