Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QRA04_RS05905 Genome accession   NZ_CP128608
Coordinates   1133358..1134104 (+) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus tropicus strain PUMB_55     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1128358..1139104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA04_RS05875 (QRA04_05860) - 1128647..1130791 (+) 2145 WP_226640677.1 HD family phosphohydrolase -
  QRA04_RS05880 (QRA04_05865) ybeY 1130788..1131258 (+) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  QRA04_RS05885 (QRA04_05870) - 1131255..1131608 (+) 354 WP_000715478.1 diacylglycerol kinase family protein -
  QRA04_RS05890 (QRA04_05875) - 1131708..1132106 (+) 399 WP_001086294.1 cytidine deaminase -
  QRA04_RS05895 (QRA04_05880) era 1132099..1133004 (+) 906 WP_001080242.1 GTPase Era -
  QRA04_RS05900 (QRA04_05885) - 1133181..1133324 (+) 144 WP_000883924.1 YqzL family protein -
  QRA04_RS05905 (QRA04_05890) recO 1133358..1134104 (+) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  QRA04_RS05910 (QRA04_05895) - 1134212..1134844 (+) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  QRA04_RS05915 (QRA04_05900) - 1134874..1135686 (+) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  QRA04_RS05920 (QRA04_05905) - 1136054..1136176 (+) 123 WP_264195464.1 hypothetical protein -
  QRA04_RS05925 (QRA04_05910) dnaG 1136538..1138334 (+) 1797 WP_000528216.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=849279 QRA04_RS05905 WP_000487010.1 1133358..1134104(+) (recO) [Bacillus tropicus strain PUMB_55]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=849279 QRA04_RS05905 WP_000487010.1 1133358..1134104(+) (recO) [Bacillus tropicus strain PUMB_55]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTCCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACCAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAGTTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552