Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QUE42_RS15230 Genome accession   NZ_AP027212
Coordinates   3061710..3062225 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain JNE131328     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3056710..3067225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE42_RS15205 (JNE131328_29120) ygaZ 3057109..3057846 (+) 738 WP_000445660.1 L-valine exporter subunit YgaZ -
  QUE42_RS15210 (JNE131328_29130) ygaH 3057836..3058171 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  QUE42_RS15215 (JNE131328_29140) emrR 3058262..3058792 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QUE42_RS15220 (JNE131328_29150) emrA 3058919..3060091 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QUE42_RS15225 (JNE131328_29160) emrB 3060108..3061646 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QUE42_RS15230 (JNE131328_29170) luxS 3061710..3062225 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  QUE42_RS15235 (JNE131328_29180) gshA 3062375..3063931 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  QUE42_RS15240 (JNE131328_29190) yqaA 3064004..3064432 (-) 429 WP_001287457.1 YqaA family protein -
  QUE42_RS15245 (JNE131328_29200) yqaB 3064429..3064995 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QUE42_RS15275 (JNE131328_29210) csrA 3066588..3066773 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=84927 QUE42_RS15230 WP_001130211.1 3061710..3062225(-) (luxS) [Escherichia coli strain JNE131328]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=84927 QUE42_RS15230 WP_001130211.1 3061710..3062225(-) (luxS) [Escherichia coli strain JNE131328]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment