Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QRA04_RS00045 Genome accession   NZ_CP128608
Coordinates   9812..10939 (-) Length   375 a.a.
NCBI ID   WP_000470750.1    Uniprot ID   A0A2C3GXQ0
Organism   Bacillus tropicus strain PUMB_55     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4812..15939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA04_RS00035 (QRA04_00035) gyrA 5291..7762 (-) 2472 WP_001282851.1 DNA gyrase subunit A -
  QRA04_RS00040 (QRA04_00040) gyrB 7851..9773 (-) 1923 WP_226640766.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QRA04_RS00045 (QRA04_00045) recF 9812..10939 (-) 1128 WP_000470750.1 DNA replication/repair protein RecF Machinery gene
  QRA04_RS00050 (QRA04_00050) yaaA 10952..11164 (-) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  QRA04_RS00055 (QRA04_00055) dnaN 11292..12431 (-) 1140 WP_001212891.1 DNA polymerase III subunit beta -
  QRA04_RS00060 (QRA04_00060) dnaA 12610..13950 (-) 1341 WP_000428025.1 chromosomal replication initiator protein DnaA -
  QRA04_RS00065 (QRA04_00065) rpmH 14516..14650 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  QRA04_RS00070 (QRA04_00070) rnpA 14727..15074 (+) 348 WP_000726630.1 ribonuclease P protein component -
  QRA04_RS00075 (QRA04_00075) spoIIIJ 15127..15894 (+) 768 WP_000727747.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43334.66 Da        Isoelectric Point: 6.7809

>NTDB_id=849263 QRA04_RS00045 WP_000470750.1 9812..10939(-) (recF) [Bacillus tropicus strain PUMB_55]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=849263 QRA04_RS00045 WP_000470750.1 9812..10939(-) (recF) [Bacillus tropicus strain PUMB_55]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGGAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCTAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTAATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTACGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATATTGCAAAAACGCTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTGGAAATTGTCTATAAACCGAGTGTGGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCAGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTATTAGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C3GXQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651