Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   V5G18_RS03205 Genome accession   NZ_CP145045
Coordinates   627937..630789 (-) Length   950 a.a.
NCBI ID   WP_047921020.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_L_2024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 622937..635789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G18_RS03180 (V5G18_03200) - 623014..624648 (+) 1635 WP_003689652.1 CTP synthase -
  V5G18_RS03185 (V5G18_03205) - 624790..625443 (+) 654 WP_172616920.1 IS1595 family transposase -
  V5G18_RS03190 (V5G18_03210) - 625440..625628 (-) 189 WP_014580099.1 transposase -
  V5G18_RS03195 (V5G18_03215) - 625651..625794 (+) 144 WP_010360533.1 hypothetical protein -
  V5G18_RS03200 (V5G18_03220) - 625944..627926 (-) 1983 WP_003706717.1 AAA family ATPase -
  V5G18_RS03205 (V5G18_03225) uvrA 627937..630789 (-) 2853 WP_047921020.1 excinuclease ABC subunit UvrA Machinery gene
  V5G18_RS03210 (V5G18_03230) - 630943..631722 (+) 780 WP_003689647.1 phosphatidylserine decarboxylase -
  V5G18_RS03215 (V5G18_03235) znuD 632262..634538 (-) 2277 WP_020996886.1 TonB-dependent zinc receptor ZnuD -
  V5G18_RS03220 (V5G18_03240) - 634949..635539 (+) 591 WP_003689643.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence


Protein


Download         Length: 950 a.a.        Molecular weight: 105610.19 Da        Isoelectric Point: 7.0119

>NTDB_id=849258 V5G18_RS03205 WP_047921020.1 627937..630789(-) (uvrA) [Neisseria gonorrhoeae strain WHO_L_2024]
MCNHHPRHSHDNDTIRIRGARTHNLKNIDLDIPRHKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQMMD
KPDVDLIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLYARVGTPYCPEHNLSLSSQTVSQMVDAVLKLPEDTRVM
ILGPAVRERKGEFVDFFADLQAQGFARVRVDGEVYQLDEVPKLEKNIKHNIDVVIDRVKVKADIKQRLAESFETALRHGN
ERALAMEMDSGEEHWFSARFACPVCSYSLPELEPRLFSFNNPMGSCPTCDGLGNTNFFDPEKVVAHPELSLATGAIDGWD
KRNQFYFQMIQSLAHHYKFDVNVAWETLPEKVKKVVLHGSGKEVIDFTYLSERGTTFNRSHAFEGIIPNLERRYRETDSE
TVREKLREYQNHRACPSCGGARLRKEARYVYVGGEPLHEVSAWPLTKTHRFFETLDLDGNKKQIAEKILKEITERLGFLI
NVGLDYLNLSRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKRLRDLGNSVIVVEHDEDAI
READFVVDMGPGAGEHGGNVLIADTPENVAKCEKSVTGQYLGGKKSIAVPSERTPVNPDRMLVLKGARGNNLKNVTLELP
LGLITCITGVSGSGKSTLINDTLAKITARELNRAQEEPAPYDDIRGLEHLDKVINVDQSPIGRTPRSNPATYTGLFTPIR
ELFAGVPLSRERGYNVGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCEVCHGKRYNRETLEIQYKGKNISQVLDMT
VEEAREFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFADIALLL
EVIGRLKGKGNSIVIIEHNLDVIKTADWIVDLGPEGGDGGGKVIAKGSPEQVAKIKGSYTGKYLKVALNK

Nucleotide


Download         Length: 2853 bp        

>NTDB_id=849258 V5G18_RS03205 WP_047921020.1 627937..630789(-) (uvrA) [Neisseria gonorrhoeae strain WHO_L_2024]
ATGTGCAACCATCATCCCCGACATTCGCACGACAACGACACCATCCGCATTCGCGGCGCGCGCACGCATAATTTGAAAAA
CATCGATTTGGACATTCCCCGCCACAAGCTCGTGGTGGTAACAGGATTGTCAGGCAGCGGCAAATCATCGCTGGCGTTTG
ATACTTTATATGCCGAAGGGCAGCGGCGTTATGTCGAGAGCCTGTCTGCCTATGCGCGGCAGTTTTTGCAGATGATGGAC
AAACCCGATGTCGATTTGATTGAAGGCCTGTCGCCTGCGATTTCCATCGAGCAGAAATCCACCAGCCACAATCCGCGTTC
CACCGTCGGCACGGTAACGGAAATCCACGACTACCTGCGCCTTTTATACGCCCGTGTCGGCACGCCGTATTGCCCCGAAC
ACAATTTGTCGCTGTCGAGCCAAACCGTGTCGCAGATGGTTGATGCCGTGTTGAAGCTGCCGGAAGATACGCGCGTGATG
ATTCTGGGGCCGGCGGTGCGCGAGCGTAAAGGCGAATTTGTCGATTTCTTTGCCGACTTGCAGGCGCAAGGCTTTGCCCG
TGTGCGCGTGGACGGCGAAGTCTATCAGCTTGACGAAGTACCGAAGCTGGAAAAAAACATCAAACACAATATCGACGTCG
TCATCGACCGCGTGAAAGTGAAAGCCGACATCAAACAACGACTGGCGGAAAGTTTTGAAACCGCGCTGCGCCACGGCAAC
GAGCGCGCGCTGGCGATGGAAATGGACAGCGGCGAAGAACATTGGTTTTCCGCGCGTTTTGCCTGCCCCGTGTGTTCGTA
CAGCCTGCCCGAATTGGAACCGCGCCTCTTTTCGTTCAACAACCCGATGGGTTCCTGCCCGACTTGCGACGGCTTGGGCA
ACACCAATTTCTTCGACCCCGAAAAAGTAGTCGCCCATCCCGAATTGTCGCTGGCAACCGGCGCGATTGACGGTTGGGAC
AAACGCAACCAATTCTATTTCCAAATGATTCAATCGCTGGCGCATCATTATAAATTTGATGTCAACGTCGCTTGGGAAAC
TTTGCCTGAAAAAGTCAAAAAAGTCGTGTTGCACGGCTCGGGCAAAGAAGTCATTGATTTCACCTACCTGTCCGAACGCG
GCACCACCTTCAACCGCAGCCACGCCTTCGAGGGCATCATCCCCAATCTCGAACGCCGCTACCGCGAAACCGACAGCGAA
ACCGTGCGCGAAAAACTGCGCGAGTACCAAAATCACCGTGCCTGCCCGAGCTGCGGCGGCGCACGTTTGCGCAAAGAAGC
ACGCTACGTTTACGTCGGCGGCGAACCGTTGCACGAAGTCTCCGCCTGGCCGCTGACCAAAACCCACCGATTCTTCGAAA
CGCTGGATTTGGACGGCAACAAAAAACAGATCGCCGAAAAAATCCTCAAAGAAATCACCGAGCGGCTCGGCTTCTTGATT
AACGTCGGGCTGGATTACCTGAATTTAAGCCGTTCCGCCGAAACCCTTTCCGGCGGCGAAGCCCAGCGCATCCGCCTCGC
CAGCCAAATCGGCAGCGGCCTGACCGGCGTGATGTACGTTTTGGACGAACCCTCCATCGGCCTGCACCAGCGCGACAACG
ACCGCCTGCTCGCCACCCTCAAACGCCTGCGCGATTTGGGCAACAGCGTAATTGTGGTCGAACACGACGAAGACGCCATC
CGCGAAGCCGATTTCGTCGTCGATATGGGCCCCGGCGCGGGCGAACACGGCGGCAACGTACTGATTGCCGACACACCCGA
AAATGTCGCCAAATGCGAAAAATCCGTTACCGGACAATACCTCGGCGGCAAAAAATCCATTGCCGTGCCGTCTGAACGCA
CGCCCGTCAATCCCGACCGAATGCTCGTCCTCAAAGGCGCGCGCGGCAACAACCTCAAAAACGTAACCCTCGAGTTGCCG
CTTGGTTTGATTACCTGCATCACCGGCGTATCCGGCAGCGGCAAATCCACCCTGATTAACGACACCCTCGCCAAAATCAC
TGCCCGCGAACTCAACCGCGCCCAAGAAGAGCCCGCCCCATACGACGACATCCGCGGCCTCGAACACCTCGACAAAGTCA
TCAACGTCGACCAATCCCCCATCGGCCGCACCCCGCGCTCCAACCCCGCCACCTACACCGGCCTGTTCACCCCCATCCGC
GAACTCTTCGCCGGCGTACCCCTCTCGCGCGAACGCGGCTACAATGTCGGCAGATTCTCCTTCAACGTCAAAGGCGGCCG
CTGCGAAGCCTGCCAAGGCGACGGCGTGATTAAAGTCGAAATGCACTTCCTCCCCGACGTGTACGTCCCCTGCGAAGTCT
GCCACGGCAAACGCTACAACCGCGAAACCCTCGAAATCCAATACAAAGGCAAAAACATCAGCCAAGTCCTCGACATGACG
GTCGAAGAAGCCCGCGAATTTTTCGACGCCGTCCCCACCGTATCGCGCAAACTGCAAACCCTGATGGACGTAGGCCTAGG
CTACATCCGCCTCGGCCAATCCGCCACCACCCTCTCCGGCGGAGAAGCCCAACGCGTCAAACTCGCCTTGGAACTCTCCA
AACGCGACACCGGCAGAACGCTCTACATCCTCGACGAACCCACCACCGGCCTGCACTTCGCCGACATCGCCCTGCTGCTG
GAAGTCATAGGCCGTCTGAAAGGCAAAGGCAACTCGATTGTGATTATCGAGCATAATCTGGATGTAATTAAAACCGCGGA
TTGGATTGTGGACTTAGGGCCGGAAGGCGGCGATGGTGGGGGTAAGGTTATCGCGAAAGGTAGCCCTGAACAAGTGGCTA
AAATTAAGGGGAGTTATACCGGGAAGTATTTGAAAGTAGCGTTGAATAAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

58.98

99.053

0.584

  uvrA Streptococcus pneumoniae TIGR4

58.98

99.053

0.584

  uvrA Streptococcus pneumoniae D39

58.98

99.053

0.584