Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F93_RS09095 Genome accession   NZ_CP145035
Coordinates   1736361..1736504 (+) Length   47 a.a.
NCBI ID   WP_025456021.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_P_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1731361..1741504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F93_RS09065 (V5F93_09080) - 1731506..1731883 (+) 378 Protein_1762 pilin -
  V5F93_RS09070 (V5F93_09085) - 1732061..1732438 (+) 378 Protein_1763 pilin -
  V5F93_RS09075 (V5F93_09090) - 1732479..1732838 (+) 360 Protein_1764 pilin -
  V5F93_RS09080 (V5F93_09095) - 1733319..1733702 (+) 384 Protein_1765 pilin -
  V5F93_RS09085 (V5F93_09105) lpxC 1734369..1735292 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5F93_RS09090 (V5F93_09110) - 1735420..1735817 (+) 398 Protein_1767 pilin -
  V5F93_RS09095 (V5F93_09115) pilE 1736361..1736504 (+) 144 WP_025456021.1 hypothetical protein Machinery gene
  V5F93_RS09100 (V5F93_09120) - 1736873..1737388 (+) 516 Protein_1769 pilin -
  V5F93_RS09105 (V5F93_09125) - 1737801..1738577 (+) 777 WP_144895438.1 opacity family porin -
  V5F93_RS09110 (V5F93_09130) pilA 1738841..1740094 (-) 1254 WP_047919725.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5076.62 Da        Isoelectric Point: 7.2431

>NTDB_id=849080 V5F93_RS09095 WP_025456021.1 1736361..1736504(+) (pilE) [Neisseria gonorrhoeae strain WHO_P_2024]
MTGFNDAAGNEKIETKHLPSTCRDKSTAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=849080 V5F93_RS09095 WP_025456021.1 1736361..1736504(+) (pilE) [Neisseria gonorrhoeae strain WHO_P_2024]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCAAC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

63.333

63.83

0.404