Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   QTL84_RS19135 Genome accession   NZ_CP128559
Coordinates   3814601..3815746 (+) Length   381 a.a.
NCBI ID   WP_014419129.1    Uniprot ID   -
Organism   Bacillus velezensis strain SH-1471     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3809601..3820746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTL84_RS19115 - 3810075..3810791 (-) 717 WP_014419126.1 Crp/Fnr family transcriptional regulator -
  QTL84_RS19120 narK 3810889..3812079 (-) 1191 WP_007407632.1 nitrate transporter NarK -
  QTL84_RS19125 argS 3812214..3813884 (-) 1671 WP_014419127.1 arginine--tRNA ligase -
  QTL84_RS19130 - 3813881..3814309 (-) 429 WP_014419128.1 DUF1934 family protein -
  QTL84_RS19135 rapF 3814601..3815746 (+) 1146 WP_014419129.1 tetratricopeptide repeat protein Regulator
  QTL84_RS19140 - 3815730..3815849 (+) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  QTL84_RS19145 - 3816047..3816250 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  QTL84_RS19150 - 3816264..3816467 (+) 204 WP_007407641.1 hypothetical protein -
  QTL84_RS19155 - 3816502..3816687 (+) 186 WP_014419130.1 DUF4177 domain-containing protein -
  QTL84_RS19160 - 3816721..3817155 (+) 435 WP_014721955.1 hypothetical protein -
  QTL84_RS19165 - 3817199..3817711 (+) 513 WP_014419132.1 stage II sporulation protein M -
  QTL84_RS19170 - 3818302..3818520 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  QTL84_RS19175 speB 3818689..3819561 (-) 873 WP_007614448.1 agmatinase -
  QTL84_RS19180 speE 3819620..3820450 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45581.65 Da        Isoelectric Point: 4.5797

>NTDB_id=849019 QTL84_RS19135 WP_014419129.1 3814601..3815746(+) (rapF) [Bacillus velezensis strain SH-1471]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNTAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=849019 QTL84_RS19135 WP_014419129.1 3814601..3815746(+) (rapF) [Bacillus velezensis strain SH-1471]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCAAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATACGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.215

100

0.782
  rapC Bacillus subtilis subsp. subtilis str. 168

57.105

99.738

0.57