Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QTL84_RS12910 Genome accession   NZ_CP128559
Coordinates   2614016..2614783 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain SH-1471     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2609016..2619783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTL84_RS12890 - 2609218..2610030 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  QTL84_RS12895 ccpN 2610056..2610694 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  QTL84_RS12900 glyS 2610795..2612834 (-) 2040 WP_014418405.1 glycine--tRNA ligase subunit beta -
  QTL84_RS12905 glyQ 2612827..2613714 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  QTL84_RS12910 recO 2614016..2614783 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  QTL84_RS12915 - 2614820..2614963 (-) 144 WP_007408286.1 YqzL family protein -
  QTL84_RS12920 era 2615120..2616025 (-) 906 WP_007408285.1 GTPase Era -
  QTL84_RS12925 - 2616006..2616416 (-) 411 WP_003152976.1 cytidine deaminase -
  QTL84_RS12930 - 2616540..2616914 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  QTL84_RS12935 ybeY 2616895..2617368 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  QTL84_RS12940 - 2617369..2619501 (-) 2133 WP_014418406.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=848995 QTL84_RS12910 WP_007408287.1 2614016..2614783(-) (recO) [Bacillus velezensis strain SH-1471]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=848995 QTL84_RS12910 WP_007408287.1 2614016..2614783(-) (recO) [Bacillus velezensis strain SH-1471]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCCCAAACGGCAAGACTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89