Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   V5F95_RS06705 Genome accession   NZ_CP145032
Coordinates   1285235..1286212 (-) Length   325 a.a.
NCBI ID   WP_149032483.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_Q_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1280235..1291212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F95_RS06670 (V5F95_06675) yaaA 1280270..1281049 (-) 780 WP_003706583.1 peroxide stress protein YaaA -
  V5F95_RS06675 (V5F95_06680) dapC 1281205..1282392 (-) 1188 WP_149032485.1 succinyldiaminopimelate transaminase -
  V5F95_RS06680 (V5F95_06685) dut 1282470..1282922 (-) 453 WP_010359930.1 dUTP diphosphatase -
  V5F95_RS06685 (V5F95_06690) - 1283088..1283798 (+) 711 Protein_1305 AzlC family ABC transporter permease -
  V5F95_RS06690 (V5F95_06695) - 1283795..1284103 (+) 309 WP_010359926.1 AzlD family protein -
  V5F95_RS06695 (V5F95_06700) pilL 1284173..1284646 (-) 474 WP_172587039.1 PilX family type IV pilin Machinery gene
  V5F95_RS06700 (V5F95_06705) pilK 1284648..1285256 (-) 609 WP_050171190.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F95_RS06705 (V5F95_06710) pilJ 1285235..1286212 (-) 978 WP_149032483.1 PilW family protein Machinery gene
  V5F95_RS06710 (V5F95_06715) pilV 1286209..1286820 (-) 612 WP_050169631.1 type IV pilus modification protein PilV Regulator
  V5F95_RS06715 (V5F95_06720) pilH 1286852..1287514 (-) 663 WP_149032537.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F95_RS06720 (V5F95_06725) dnaB 1287822..1289228 (-) 1407 WP_050164993.1 replicative DNA helicase -
  V5F95_RS06725 (V5F95_06730) - 1289392..1289973 (+) 582 WP_003690895.1 superoxide dismutase -
  V5F95_RS06730 (V5F95_06735) - 1290205..1290714 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence


Protein


Download         Length: 325 a.a.        Molecular weight: 35789.93 Da        Isoelectric Point: 9.8167

>NTDB_id=848992 V5F95_RS06705 WP_149032483.1 1285235..1286212(-) (pilJ) [Neisseria gonorrhoeae strain WHO_Q_2024]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDVANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTKGDIVDSSNQTQSNLAKPGAKQENPLFSLKRSGMDKQLIPVAESIDIKYPGFIQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGRFGNNEESLFRFQLDDKGKWGNPQLLV
KKVKRMDVRYIYVSGCPEDEDAGKEEKFRYTNKFDKSKNAVPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNVC
ANRTL

Nucleotide


Download         Length: 978 bp        

>NTDB_id=848992 V5F95_RS06705 WP_149032483.1 1285235..1286212(-) (pilJ) [Neisseria gonorrhoeae strain WHO_Q_2024]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGTGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGGCGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCTTGCAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCATAG
ATATTAAATATCCGGGTTTTATCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
GGTTTGGCAATAATGAGGAAAGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTG
AAAAAGGTTAAACGTATGGATGTGCGGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAAAA
ATTCAGATATACGAATAAATTCGACAAATCCAAAAATGCTGTGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTA
ATGCCAAGATTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGC
GCAAACAGAACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

75.61

100

0.763