Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QTL84_RS07675 Genome accession   NZ_CP128559
Coordinates   1441686..1441970 (+) Length   94 a.a.
NCBI ID   WP_014417633.1    Uniprot ID   I2C4H1
Organism   Bacillus velezensis strain SH-1471     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1436686..1446970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTL84_RS07655 - 1437930..1438838 (+) 909 WP_014417631.1 ketopantoate reductase family protein -
  QTL84_RS07660 - 1438869..1440101 (-) 1233 WP_007409644.1 aminopeptidase -
  QTL84_RS07665 - 1440202..1440336 (-) 135 WP_003154559.1 protein YkpC -
  QTL84_RS07670 mreBH 1440408..1441415 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  QTL84_RS07675 abrB 1441686..1441970 (+) 285 WP_014417633.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QTL84_RS07680 - 1442143..1443447 (+) 1305 WP_014417634.1 ATP-binding protein -
  QTL84_RS07685 - 1443449..1444276 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase family protein -
  QTL84_RS07690 ktrC 1444317..1444982 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  QTL84_RS07695 ade 1445131..1446864 (+) 1734 WP_014417636.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10516.38 Da        Isoelectric Point: 5.8979

>NTDB_id=848979 QTL84_RS07675 WP_014417633.1 1441686..1441970(+) (abrB) [Bacillus velezensis strain SH-1471]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=848979 QTL84_RS07675 WP_014417633.1 1441686..1441970(+) (abrB) [Bacillus velezensis strain SH-1471]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543