Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G19_RS11025 Genome accession   NZ_CP145028
Coordinates   2106683..2107168 (-) Length   161 a.a.
NCBI ID   WP_125121586.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_R_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2101683..2112168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G19_RS10995 (V5G19_11025) - 2102288..2102796 (-) 509 Protein_2127 pilin -
  V5G19_RS11000 (V5G19_11030) - 2103612..2103730 (-) 119 Protein_2128 pilin -
  V5G19_RS11005 (V5G19_11035) - 2103853..2104173 (-) 321 Protein_2129 pilin -
  V5G19_RS11010 (V5G19_11040) - 2104234..2104617 (-) 384 Protein_2130 pilin -
  V5G19_RS11015 (V5G19_11045) lpxC 2104762..2105685 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G19_RS11020 (V5G19_11050) - 2106169..2106548 (-) 380 Protein_2132 pilin -
  V5G19_RS11025 (V5G19_11055) pilE 2106683..2107168 (-) 486 WP_125121586.1 pilin Machinery gene
  V5G19_RS11030 (V5G19_11060) - 2107225..2107572 (-) 348 Protein_2134 pilin -
  V5G19_RS11035 (V5G19_11065) - 2107625..2108018 (-) 394 Protein_2135 pilin -
  V5G19_RS11040 (V5G19_11070) - 2108153..2108592 (-) 440 Protein_2136 pilin -
  V5G19_RS11045 (V5G19_11075) - 2109118..2109846 (-) 729 WP_353114220.1 pilin -
  V5G19_RS11050 (V5G19_11080) pilE 2109770..2110087 (-) 318 WP_003697861.1 pilin Machinery gene
  V5G19_RS11055 (V5G19_11085) - 2110417..2110608 (+) 192 WP_014580443.1 hypothetical protein -
  V5G19_RS11060 (V5G19_11090) - 2110672..2111361 (-) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  V5G19_RS11065 (V5G19_11095) - 2111358..2112101 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17314.41 Da        Isoelectric Point: 9.7934

>NTDB_id=848946 V5G19_RS11025 WP_125121586.1 2106683..2107168(-) (pilE) [Neisseria gonorrhoeae strain WHO_R_2024]
MASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRTDKANDDVTDDATATMNS
SNVNKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKN
T

Nucleotide


Download         Length: 486 bp        

>NTDB_id=848946 V5G19_RS11025 WP_125121586.1 2106683..2107168(-) (pilE) [Neisseria gonorrhoeae strain WHO_R_2024]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAAT
GGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACAATGAATTCA
AGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTG
CGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACA
CCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-61)

Pilin (bacterial filament) (Pilin)

(72-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.66

91.304

0.453