Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QUH71_RS22165 Genome accession   NZ_CP128552
Coordinates   4249345..4250397 (-) Length   350 a.a.
NCBI ID   WP_028411611.1    Uniprot ID   -
Organism   Priestia aryabhattai strain XT37     
Function   assembly of the pseudopilus; dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4244345..4255397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUH71_RS22125 (QUH71_22125) - 4245361..4246185 (+) 825 WP_098112943.1 YqhG family protein -
  QUH71_RS22130 (QUH71_22130) - 4246209..4246394 (-) 186 WP_013059170.1 YqzE family protein -
  QUH71_RS22135 (QUH71_22135) comGG 4246438..4246812 (-) 375 WP_098112944.1 competence type IV pilus minor pilin ComGG -
  QUH71_RS22140 (QUH71_22140) comGF 4246802..4247239 (-) 438 WP_289578444.1 competence type IV pilus minor pilin ComGF -
  QUH71_RS22145 (QUH71_22145) - 4247236..4247574 (-) 339 WP_098112946.1 type II secretion system protein -
  QUH71_RS22150 (QUH71_22150) comGD 4247558..4247995 (-) 438 WP_154973101.1 competence type IV pilus minor pilin ComGD -
  QUH71_RS22155 (QUH71_22155) comGC 4247982..4248293 (-) 312 WP_016765560.1 competence type IV pilus major pilin ComGC -
  QUH71_RS22160 (QUH71_22160) comGB 4248308..4249354 (-) 1047 WP_033579696.1 competence type IV pilus assembly protein ComGB -
  QUH71_RS22165 (QUH71_22165) comGA 4249345..4250397 (-) 1053 WP_028411611.1 competence type IV pilus ATPase ComGA Machinery gene
  QUH71_RS22170 (QUH71_22170) - 4250668..4251051 (-) 384 WP_028411612.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QUH71_RS22175 (QUH71_22175) - 4251313..4251549 (+) 237 WP_013059179.1 DUF2626 domain-containing protein -
  QUH71_RS22180 (QUH71_22180) - 4251587..4252219 (-) 633 WP_028411613.1 MBL fold metallo-hydrolase -
  QUH71_RS22185 (QUH71_22185) - 4252429..4252605 (+) 177 WP_028411614.1 DUF2759 domain-containing protein -
  QUH71_RS22190 (QUH71_22190) - 4252641..4253543 (-) 903 WP_028411615.1 M14 family metallocarboxypeptidase -
  QUH71_RS22195 (QUH71_22195) - 4253655..4254623 (-) 969 WP_098112947.1 ROK family glucokinase -
  QUH71_RS22200 (QUH71_22200) - 4254626..4254832 (-) 207 WP_028411617.1 YqgQ family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39596.97 Da        Isoelectric Point: 9.0586

>NTDB_id=848929 QUH71_RS22165 WP_028411611.1 4249345..4250397(-) (comGA) [Priestia aryabhattai strain XT37]
MTEIEQFATYVIRDACECRSSDVHIVPRKKDAVIQLRIDQELILKRVISKEMSERLISHFKFLGGMDIGERRKPQNGALT
TSVDHYQVNLRLSTLPTSHDESLVIRLLPHQQSTSLKHLSLFPEHTKKLISLLKFSHGLIIFTGPTGSGKTTTLYTLLHE
VKHLFNRNVITLEDPIEKPSETVLQVQVNERAGITYTTGLKAILRHDPDIIMVGEIRDSETAKIAVRAALTGHLVLTTMH
TKDTKGSLYRLLEFGVSFQEMEQTLVAVAAQRLVEIRCPLCSGKCHPACKKMRKHRQSSIYELLYGKELSAVMREVKGEN
ADYDYKTLRDVILKGIALGYLYPHSLDGWG

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=848929 QUH71_RS22165 WP_028411611.1 4249345..4250397(-) (comGA) [Priestia aryabhattai strain XT37]
TTGACCGAAATTGAACAGTTTGCTACTTACGTTATACGAGATGCATGTGAGTGTCGAAGTTCTGATGTGCATATTGTGCC
CCGAAAGAAAGATGCTGTGATTCAGCTGCGAATTGACCAGGAGCTTATTTTAAAGAGGGTTATTTCAAAGGAAATGTCTG
AACGGCTCATTTCGCATTTTAAGTTTTTAGGGGGAATGGATATTGGGGAGCGCAGAAAACCTCAAAATGGTGCATTGACC
ACTTCCGTTGATCACTATCAAGTAAATTTGCGTTTATCAACTCTTCCTACTTCTCATGATGAAAGTCTTGTTATTCGGCT
TTTGCCTCATCAACAATCTACCTCTCTCAAACATTTATCTCTTTTTCCTGAACATACTAAAAAGCTTATTTCTCTCTTGA
AATTCTCTCATGGATTAATTATTTTTACCGGTCCTACAGGATCAGGTAAAACCACTACTCTATATACTCTTTTACACGAA
GTAAAGCACCTTTTTAATCGAAATGTTATTACACTAGAAGATCCTATTGAAAAACCGAGTGAAACCGTGCTTCAAGTGCA
GGTAAATGAACGCGCAGGGATTACGTATACGACTGGTTTAAAAGCTATATTGCGCCATGATCCAGACATTATCATGGTGG
GAGAAATAAGAGATAGTGAGACCGCCAAAATTGCTGTGAGAGCAGCGCTTACCGGACACTTGGTTTTGACAACGATGCAT
ACTAAAGATACAAAAGGATCTTTGTACAGGCTGCTTGAGTTTGGCGTTAGCTTTCAAGAAATGGAGCAGACTCTTGTAGC
AGTAGCTGCACAGCGTCTTGTAGAAATTCGCTGTCCGCTGTGTTCGGGAAAATGCCACCCTGCTTGTAAAAAAATGAGGA
AGCATCGTCAGTCCAGCATATACGAATTGCTTTATGGCAAGGAGCTTAGCGCAGTGATGAGAGAAGTGAAAGGAGAAAAT
GCGGATTATGATTATAAGACGCTCCGAGATGTTATTCTAAAAGGAATCGCGCTAGGCTATTTATATCCGCATTCGCTAGA
CGGATGGGGGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(12-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

58.571

100

0.586