Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QUH71_RS16210 Genome accession   NZ_CP128552
Coordinates   3154807..3155229 (+) Length   140 a.a.
NCBI ID   WP_047750471.1    Uniprot ID   -
Organism   Priestia aryabhattai strain XT37     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3149807..3160229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUH71_RS16185 (QUH71_16185) - 3150159..3150992 (-) 834 WP_165636480.1 AraC family transcriptional regulator -
  QUH71_RS16190 (QUH71_16190) - 3151195..3152016 (+) 822 WP_047750474.1 histidine kinase -
  QUH71_RS16195 (QUH71_16195) - 3152017..3152658 (+) 642 WP_033580507.1 response regulator transcription factor -
  QUH71_RS16200 (QUH71_16200) - 3152793..3154172 (+) 1380 WP_099331141.1 PepSY domain-containing protein -
  QUH71_RS16205 (QUH71_16205) - 3154202..3154666 (+) 465 WP_099000378.1 FixH family protein -
  QUH71_RS16210 (QUH71_16210) nucA/comI 3154807..3155229 (+) 423 WP_047750471.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QUH71_RS16215 (QUH71_16215) - 3155384..3155737 (+) 354 WP_223272376.1 DUF1516 family protein -
  QUH71_RS16220 (QUH71_16220) - 3155777..3156370 (-) 594 WP_289578055.1 hypothetical protein -
  QUH71_RS16225 (QUH71_16225) - 3156523..3157179 (-) 657 WP_289578056.1 TetR/AcrR family transcriptional regulator -
  QUH71_RS16230 (QUH71_16230) - 3157203..3158480 (-) 1278 WP_289578057.1 glycosyltransferase -
  QUH71_RS16235 (QUH71_16235) - 3158813..3159298 (-) 486 WP_034265399.1 hypothetical protein -
  QUH71_RS16240 (QUH71_16240) fsa 3159377..3160045 (-) 669 WP_013083988.1 fructose-6-phosphate aldolase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15299.15 Da        Isoelectric Point: 4.4990

>NTDB_id=848918 QUH71_RS16210 WP_047750471.1 3154807..3155229(+) (nucA/comI) [Priestia aryabhattai strain XT37]
MKKIVSGILILVIAVIVMIEGNPLEQNSSTNPSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIATKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=848918 QUH71_RS16210 WP_047750471.1 3154807..3155229(+) (nucA/comI) [Priestia aryabhattai strain XT37]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTAATAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATCCCTCCTACGATGAAGTCATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGATCGAGACGGTGCTGAAGAAAACCGCCGTGAGTCTTTAAAA
GGCATTGCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGCGCAGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATTTCACATCAAGTAGATGAGTTTCCAGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.345

82.857

0.5