Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QTN52_RS13065 Genome accession   NZ_CP128551
Coordinates   2650123..2650890 (-) Length   255 a.a.
NCBI ID   WP_017418171.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123441     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2645123..2655890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN52_RS13045 (QTN52_13045) - 2645326..2646138 (-) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -
  QTN52_RS13050 (QTN52_13050) ccpN 2646164..2646802 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  QTN52_RS13055 (QTN52_13055) glyS 2646902..2648941 (-) 2040 WP_017418170.1 glycine--tRNA ligase subunit beta -
  QTN52_RS13060 (QTN52_13060) glyQ 2648934..2649821 (-) 888 WP_016938921.1 glycine--tRNA ligase subunit alpha -
  QTN52_RS13065 (QTN52_13065) recO 2650123..2650890 (-) 768 WP_017418171.1 DNA repair protein RecO Machinery gene
  QTN52_RS13070 (QTN52_13070) - 2650927..2651070 (-) 144 WP_007408286.1 YqzL family protein -
  QTN52_RS13075 (QTN52_13075) era 2651226..2652131 (-) 906 WP_014470680.1 GTPase Era -
  QTN52_RS13080 (QTN52_13080) - 2652112..2652522 (-) 411 WP_017418172.1 cytidine deaminase -
  QTN52_RS13085 (QTN52_13085) - 2652646..2653020 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  QTN52_RS13090 (QTN52_13090) ybeY 2653001..2653474 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  QTN52_RS13095 (QTN52_13095) - 2653475..2655607 (-) 2133 WP_065180881.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29319.94 Da        Isoelectric Point: 8.5625

>NTDB_id=848861 QTN52_RS13065 WP_017418171.1 2650123..2650890(-) (recO) [Bacillus velezensis strain SRCM123441]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGNVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=848861 QTN52_RS13065 WP_017418171.1 2650123..2650890(-) (recO) [Bacillus velezensis strain SRCM123441]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCTGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAACGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894