Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LU680_RS08700 Genome accession   NZ_CP128549
Coordinates   1842270..1842905 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas monteilii strain NMI985_06     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1837270..1847905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU680_RS08680 (LU680_08680) - 1837565..1838497 (+) 933 WP_016715124.1 ABC transporter ATP-binding protein -
  LU680_RS08685 (LU680_08685) - 1838494..1839273 (+) 780 WP_016715125.1 ABC transporter permease -
  LU680_RS08690 (LU680_08690) - 1839277..1839789 (-) 513 Protein_1696 DUF2062 domain-containing protein -
  LU680_RS08695 (LU680_08695) comA 1839932..1842145 (+) 2214 WP_028699304.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LU680_RS08700 (LU680_08700) exbB 1842270..1842905 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LU680_RS08705 (LU680_08705) - 1842902..1843336 (+) 435 WP_012271149.1 biopolymer transporter ExbD -
  LU680_RS08710 (LU680_08710) lpxK 1843336..1844337 (+) 1002 WP_016715128.1 tetraacyldisaccharide 4'-kinase -
  LU680_RS08715 (LU680_08715) - 1844382..1844567 (+) 186 WP_003247142.1 Trm112 family protein -
  LU680_RS08720 (LU680_08720) kdsB 1844564..1845328 (+) 765 WP_016715129.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LU680_RS08725 (LU680_08725) - 1845328..1845792 (+) 465 WP_016715130.1 low molecular weight protein-tyrosine-phosphatase -
  LU680_RS08730 (LU680_08730) murB 1845789..1846808 (+) 1020 WP_016715131.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=848774 LU680_RS08700 WP_016391244.1 1842270..1842905(+) (exbB) [Pseudomonas monteilii strain NMI985_06]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=848774 LU680_RS08700 WP_016391244.1 1842270..1842905(+) (exbB) [Pseudomonas monteilii strain NMI985_06]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAAATCCTTGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATTGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACTGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTACTGGCCGGGGGGATCTCCAAGGCCCTGGTGACCACCGCA
GCAGGCCTGATGGTCGGTATCCCGGCCGTATTCTTCCACCGTTTCCTGCTGCGCCGCATTGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGATCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829