Detailed information NTG0848745

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LU664_RS03455
• Genome accession: NZ_CP128548
• Coordinates: 750914..751780 (-)
• Length: 288 a.a.
• NCBI ID: WP_164524104.1
• Uniprot ID: -
• Organism: Pseudomonas kurunegalensis strain NMI3456_12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 745914..756780

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LU664_RS03420 (LU664_003420)	-	746374..747669 (-)	1296	WP_060500123.1	NAD(P)/FAD-dependent oxidoreductase	-
LU664_RS03425 (LU664_003425)	-	747754..747927 (-)	174	WP_013970765.1	DUF3094 family protein	-
LU664_RS03430 (LU664_003430)	-	748060..748689 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
LU664_RS03435 (LU664_003435)	-	748745..749176 (-)	432	WP_060500126.1	hypothetical protein	-
LU664_RS03440 (LU664_003440)	-	749263..749970 (+)	708	WP_060500122.1	energy-coupling factor ABC transporter permease	-
LU664_RS03445 (LU664_003445)	yacG	750094..750294 (-)	201	WP_016484797.1	DNA gyrase inhibitor YacG	-
LU664_RS03450 (LU664_003450)	coaE	750291..750914 (-)	624	WP_016713386.1	dephospho-CoA kinase	-
LU664_RS03455 (LU664_003455)	pilD	750914..751780 (-)	867	WP_164524104.1	A24 family peptidase	Machinery gene
LU664_RS03460 (LU664_003460)	-	751783..752991 (-)	1209	WP_060500119.1	type II secretion system F family protein	-
LU664_RS03465 (LU664_003465)	-	753208..753618 (+)	411	WP_164524105.1	pilin	-
LU664_RS03475 (LU664_003475)	-	753931..755148 (+)	1218	WP_164524106.1	tyrosine-type recombinase/integrase	-
LU664_RS03480 (LU664_003480)	-	755145..755891 (+)	747	WP_164524107.1	hypothetical protein	-
LU664_RS03485 (LU664_003485)	-	756009..756212 (+)	204	WP_081502512.1	AlpA family transcriptional regulator	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31981.16 Da
• Isoelectric Point: 7.5984

>NTDB_id=848745 LU664_RS03455 WP_164524104.1 750914..751780(-) (pilD) [Pseudomonas kurunegalensis strain NMI3456_12]
MTLWTLLAEQPAYFLTLATLLGLLVGSFLNVLVYRLPIMLERQWQREAQEVLGLPVTQHERFDLCLPASRCPHCAHQIRA
WENIPVISYLALRGRCSACKTRISPRYPVVEIASALLSLVVAWRFGASVEALQALPLTWCLLALSLIDAEHQLLPDMLVL
PMLWLGLIVNAFNLYAPLTDALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAMPFGPYLAIAGWIAVLWGDEIVASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=848745 LU664_RS03455 WP_164524104.1 750914..751780(-) (pilD) [Pseudomonas kurunegalensis strain NMI3456_12]
ATGACTTTATGGACTTTGCTGGCAGAGCAGCCGGCGTACTTCCTCACCCTGGCCACGCTGCTCGGCCTGTTGGTGGGCAG
TTTTCTCAATGTGCTGGTGTATCGGCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCACAAGAAGTGTTGGGGC
TGCCGGTTACGCAACACGAACGGTTCGACCTGTGCCTGCCCGCCTCCCGCTGCCCACATTGCGCGCATCAGATTCGCGCG
TGGGAGAACATTCCGGTCATCAGTTACCTGGCATTGCGCGGGCGTTGCTCAGCCTGCAAAACCCGTATCAGCCCGCGCTA
CCCGGTGGTGGAAATCGCCAGCGCGCTGCTGTCGCTGGTGGTGGCGTGGCGCTTTGGCGCTTCGGTAGAGGCGTTGCAGG
CACTGCCACTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCAGAACACCAATTGCTGCCGGATATGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAATGCCTTCAACCTGTATGCCCCGCTTACCGACGCGCTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTCACCGGCAAGGAAGGTATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACGCTGCTGCTGTCGTCGGTGGTGGGGGCG
CTGGCTGGCCTGTGCCTGCTGCGTCTGCGCCGGCATGCCATGGGCACGGCGATGCCGTTCGGGCCTTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATAGTCGCCTCTTACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.43	96.181	0.514
pilD	Acinetobacter baumannii D1279779	52.632	92.361	0.486
pilD	Acinetobacter nosocomialis M2	51.88	92.361	0.479
pilD	Vibrio campbellii strain DS40M4	48.561	96.528	0.469
pilD	Neisseria gonorrhoeae MS11	48.881	93.056	0.455