Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5G12_RS02680 Genome accession   NZ_CP145021
Coordinates   517859..518470 (+) Length   203 a.a.
NCBI ID   WP_012503481.1    Uniprot ID   B4RKG6
Organism   Neisseria gonorrhoeae strain WHO_V_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512859..523470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G12_RS02655 (V5G12_02660) - 513158..513739 (-) 582 WP_003690895.1 superoxide dismutase -
  V5G12_RS02660 (V5G12_02665) dnaB 513902..515308 (+) 1407 WP_071200491.1 replicative DNA helicase -
  V5G12_RS02665 (V5G12_02670) pilH 515616..516278 (+) 663 WP_106167105.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G12_RS02670 (V5G12_02675) pilV/pilI 516310..516924 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Regulator
  V5G12_RS02675 (V5G12_02680) pilJ 516921..517880 (+) 960 WP_050169726.1 PilW family protein Machinery gene
  V5G12_RS02680 (V5G12_02685) pilK 517859..518470 (+) 612 WP_012503481.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G12_RS02685 (V5G12_02690) pilL 518472..518945 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  V5G12_RS02690 (V5G12_02695) - 519015..519323 (-) 309 WP_003706588.1 AzlD family protein -
  V5G12_RS02695 (V5G12_02700) - 519320..520031 (-) 712 Protein_521 AzlC family ABC transporter permease -
  V5G12_RS02700 (V5G12_02705) dut 520197..520649 (+) 453 WP_003701071.1 dUTP diphosphatase -
  V5G12_RS02705 (V5G12_02710) dapC 520721..521908 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  V5G12_RS02710 (V5G12_02715) yaaA 522064..522843 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22021.91 Da        Isoelectric Point: 8.0862

>NTDB_id=848688 V5G12_RS02680 WP_012503481.1 517859..518470(+) (pilK) [Neisseria gonorrhoeae strain WHO_V_2024]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=848688 V5G12_RS02680 WP_012503481.1 517859..518470(+) (pilK) [Neisseria gonorrhoeae strain WHO_V_2024]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RKG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

96.059

100

0.961