Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LU662_RS07950 Genome accession   NZ_CP128545
Coordinates   1668763..1669398 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas monteilii strain NMI6266_12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1663763..1674398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU662_RS07930 (LU662_007930) - 1664058..1664990 (+) 933 WP_016715124.1 ABC transporter ATP-binding protein -
  LU662_RS07935 (LU662_007935) - 1664987..1665766 (+) 780 WP_016715125.1 ABC transporter permease -
  LU662_RS07940 (LU662_007940) - 1665770..1666282 (-) 513 Protein_1544 DUF2062 domain-containing protein -
  LU662_RS07945 (LU662_007945) comA 1666425..1668638 (+) 2214 WP_028699304.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LU662_RS07950 (LU662_007950) exbB 1668763..1669398 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LU662_RS07955 (LU662_007955) - 1669395..1669829 (+) 435 WP_012271149.1 biopolymer transporter ExbD -
  LU662_RS07960 (LU662_007960) lpxK 1669829..1670830 (+) 1002 WP_016715128.1 tetraacyldisaccharide 4'-kinase -
  LU662_RS07965 (LU662_007965) - 1670875..1671060 (+) 186 WP_003247142.1 Trm112 family protein -
  LU662_RS07970 (LU662_007970) kdsB 1671057..1671821 (+) 765 WP_016715129.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LU662_RS07975 (LU662_007975) - 1671821..1672285 (+) 465 WP_016715130.1 low molecular weight protein-tyrosine-phosphatase -
  LU662_RS07980 (LU662_007980) murB 1672282..1673301 (+) 1020 WP_016715131.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=848684 LU662_RS07950 WP_016391244.1 1668763..1669398(+) (exbB) [Pseudomonas monteilii strain NMI6266_12]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=848684 LU662_RS07950 WP_016391244.1 1668763..1669398(+) (exbB) [Pseudomonas monteilii strain NMI6266_12]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAAATCCTTGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATTGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACTGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTACTGGCCGGGGGGATCTCCAAGGCCCTGGTGACCACCGCA
GCAGGCCTGATGGTCGGTATCCCGGCCGTATTCTTCCACCGTTTCCTGCTGCGCCGCATTGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGATCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829