Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LU687_RS07780 Genome accession   NZ_CP128542
Coordinates   1639576..1640211 (+) Length   211 a.a.
NCBI ID   WP_015269400.1    Uniprot ID   A0A2N5B7G8
Organism   Pseudomonas asiatica strain NMI3658_15     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1634576..1645211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU687_RS07760 (LU687_007760) - 1634582..1635514 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  LU687_RS07765 (LU687_007765) - 1635511..1636290 (+) 780 WP_015269397.1 ABC transporter permease -
  LU687_RS07770 (LU687_007770) - 1636300..1636806 (-) 507 Protein_1506 DUF2062 domain-containing protein -
  LU687_RS07775 (LU687_007775) comA 1636949..1639162 (+) 2214 WP_043936088.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LU687_RS07780 (LU687_007780) exbB 1639576..1640211 (+) 636 WP_015269400.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LU687_RS07785 (LU687_007785) - 1640208..1640642 (+) 435 WP_013971564.1 biopolymer transporter ExbD -
  LU687_RS07790 (LU687_007790) lpxK 1640642..1641643 (+) 1002 WP_015269401.1 tetraacyldisaccharide 4'-kinase -
  LU687_RS07795 (LU687_007795) - 1641688..1641873 (+) 186 WP_011532874.1 Trm112 family protein -
  LU687_RS07800 (LU687_007800) kdsB 1641870..1642634 (+) 765 WP_015269402.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LU687_RS07805 (LU687_007805) - 1642634..1643098 (+) 465 WP_015269403.1 low molecular weight protein-tyrosine-phosphatase -
  LU687_RS07810 (LU687_007810) murB 1643095..1644114 (+) 1020 WP_015269404.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22888.17 Da        Isoelectric Point: 7.3616

>NTDB_id=848615 LU687_RS07780 WP_015269400.1 1639576..1640211(+) (exbB) [Pseudomonas asiatica strain NMI3658_15]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=848615 LU687_RS07780 WP_015269400.1 1639576..1640211(+) (exbB) [Pseudomonas asiatica strain NMI3658_15]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGTCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAAATCCTTGCCGCCGGTCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCTTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCTCCGCTGTTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTGTTGGCCGGTGGTATCTCCAAAGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCAGCGCCGCATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAGGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N5B7G8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.381

99.526

0.82