Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V5100_RS16765 Genome accession   NZ_CP144930
Coordinates   3265464..3266093 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain SCPM-O-B-9504     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3260464..3271093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5100_RS16750 (V5100_16760) helD 3260706..3262760 (-) 2055 WP_001295354.1 DNA helicase IV -
  V5100_RS16755 (V5100_16765) yccF 3262883..3263329 (+) 447 WP_001261235.1 YccF domain-containing protein -
  V5100_RS16760 (V5100_16770) yccS 3263339..3265501 (+) 2163 WP_000875061.1 YccS family putative transporter -
  V5100_RS16765 (V5100_16775) sxy/tfoX 3265464..3266093 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V5100_RS16770 (V5100_16780) sulA 3266312..3266821 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  V5100_RS16775 (V5100_16785) ompA 3267178..3268218 (+) 1041 WP_001340343.1 porin OmpA -
  V5100_RS16780 (V5100_16790) matP 3268294..3268746 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  V5100_RS16785 (V5100_16795) ycbZ 3268932..3270692 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=848423 V5100_RS16765 WP_000839153.1 3265464..3266093(-) (sxy/tfoX) [Escherichia coli strain SCPM-O-B-9504]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=848423 V5100_RS16765 WP_000839153.1 3265464..3266093(-) (sxy/tfoX) [Escherichia coli strain SCPM-O-B-9504]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1