Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KI233_RS22880 Genome accession   NZ_AP024331
Coordinates   4969051..4970574 (+) Length   507 a.a.
NCBI ID   WP_167864774.1    Uniprot ID   -
Organism   Erwinia rhapontici strain MAFF 311154     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4964051..4975574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI233_RS22855 (ERHA54_47000) - 4965627..4966553 (-) 927 WP_133846880.1 branched-chain amino acid transaminase -
  KI233_RS22860 (ERHA54_47010) ilvM 4966572..4966829 (-) 258 WP_133846881.1 acetolactate synthase 2 small subunit -
  KI233_RS22865 (ERHA54_47020) ilvG 4966826..4968472 (-) 1647 WP_159338528.1 acetolactate synthase 2 catalytic subunit -
  KI233_RS22870 ilvL 4968612..4968710 (-) 99 WP_105595116.1 ilv operon leader peptide -
  KI233_RS22875 (ERHA54_47030) - 4968844..4968981 (-) 138 WP_159338527.1 hypothetical protein -
  KI233_RS22880 (ERHA54_47040) comM 4969051..4970574 (+) 1524 WP_167864774.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KI233_RS22885 (ERHA54_47050) - 4970607..4970945 (-) 339 WP_062749119.1 DUF413 domain-containing protein -
  KI233_RS22890 (ERHA54_47060) hdfR 4971067..4971894 (+) 828 WP_133846884.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54631.40 Da        Isoelectric Point: 7.8471

>NTDB_id=84841 KI233_RS22880 WP_167864774.1 4969051..4970574(+) (comM) [Erwinia rhapontici strain MAFF 311154]
MSLSVANTRAALGIQAPLVSVEVHLSNGLPALSLVGLPETTVKEARDRVRSAIINSGFTFPAKRITVNLAPADLPKEGGR
YDLPIAIAILAASEQIPAAKLAGYEFLGELALNGALRGVQGSIPAAVAALNAGRQLILSADNQNDVGLIQHGKSLIASHL
LEVCAFLHGRTQLEEAQSNDLVCLSHVTGDLNEIIGQQQAKRALEVTAAGGHNLLLIGPPGTGKTMLASRLNGLMPPLSD
REALESASVASLLGSGDLHRQWRQRPFRSPHHSSSLYALVGGGSLPKPGEISLAHNGILFLDELPEFERRALDALREPLE
SGEISISRARAKITYPARFQLIAAMNPSPTGHYSGPHNRSSPQQTLRYLSRLSGPFLDRFDLSLEVPLLPPGMLSTQQGN
GESSQQVRERVLAARERQINRCGKVNAVMNNNDIKACCTLTPEDAQWLEQVLNQLGLSVRAWQRLLKVARTIADLAGENE
VSREHLTEAVSYRGIDRLLIHLHNSLQ

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=84841 KI233_RS22880 WP_167864774.1 4969051..4970574(+) (comM) [Erwinia rhapontici strain MAFF 311154]
ATGTCGCTATCTGTTGCCAATACCCGTGCCGCATTGGGCATTCAGGCGCCGCTGGTGTCTGTTGAAGTTCACCTGAGTAA
TGGCCTGCCCGCTTTGTCACTGGTTGGTCTGCCCGAAACGACAGTTAAAGAAGCCCGGGACCGGGTGCGCAGCGCCATCA
TTAACAGCGGTTTCACCTTTCCTGCAAAACGCATTACCGTCAATCTTGCCCCCGCCGATCTCCCGAAAGAAGGCGGCAGG
TATGACTTGCCTATCGCTATAGCCATCCTGGCAGCTTCAGAGCAGATTCCTGCGGCGAAACTTGCCGGGTATGAGTTCCT
CGGTGAGTTAGCCCTCAACGGCGCGCTACGTGGCGTACAGGGCTCAATTCCTGCAGCCGTTGCGGCACTCAATGCAGGAA
GGCAACTCATCCTCTCAGCGGATAACCAAAATGATGTTGGCCTTATCCAGCACGGGAAAAGTTTAATCGCCAGCCATCTT
CTTGAGGTCTGTGCTTTCCTGCATGGCAGAACGCAGCTTGAAGAAGCCCAGAGCAACGACCTGGTCTGTCTGTCGCACGT
TACAGGGGATTTAAACGAGATTATCGGCCAGCAGCAGGCCAAGCGCGCACTGGAGGTAACAGCAGCCGGTGGGCACAACC
TGCTCTTAATTGGCCCACCCGGCACGGGGAAGACGATGCTCGCCTCACGGTTGAACGGTCTGATGCCGCCTCTAAGCGAT
CGTGAGGCCCTGGAGAGTGCCAGCGTAGCCAGTCTGCTAGGCAGTGGCGATCTGCACCGTCAGTGGCGCCAGAGGCCATT
CCGTTCCCCTCATCACAGTTCATCTCTGTATGCTCTTGTCGGCGGTGGTTCACTGCCTAAGCCAGGTGAGATTTCCCTTG
CCCACAACGGCATACTGTTTCTTGATGAGCTTCCGGAGTTTGAACGCCGCGCATTGGATGCACTGCGTGAACCGCTTGAA
TCAGGGGAGATCAGTATTTCGCGGGCACGTGCCAAAATCACCTATCCGGCACGCTTTCAGCTGATCGCCGCAATGAACCC
CAGCCCAACCGGGCATTATAGCGGCCCACATAATCGAAGTTCACCCCAGCAGACATTACGTTATCTCAGCCGTCTGTCTG
GCCCTTTTCTCGATCGTTTTGATCTCTCTCTTGAAGTGCCGTTACTACCACCAGGGATGTTGAGTACACAACAGGGTAAT
GGAGAGTCCAGTCAGCAGGTGCGTGAACGTGTGCTGGCCGCACGGGAACGCCAGATCAATCGCTGCGGCAAAGTGAATGC
GGTAATGAACAACAACGATATCAAGGCATGCTGTACACTTACGCCTGAGGATGCTCAATGGCTGGAGCAAGTGCTGAACC
AACTGGGGCTGTCAGTGCGGGCATGGCAACGTTTGCTGAAGGTGGCACGTACGATTGCCGATCTGGCAGGGGAGAACGAG
GTTAGCAGGGAGCATTTAACGGAAGCCGTTAGTTACCGAGGGATCGACCGCCTGCTGATTCATCTGCATAACAGCCTGCA
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.157

100

0.625
  comM Glaesserella parasuis strain SC1401

61.736

100

0.617
  comM Vibrio cholerae strain A1552

61.155

99.014

0.606
  comM Vibrio campbellii strain DS40M4

60.757

99.014

0.602
  comM Legionella pneumophila str. Paris

50.202

97.83

0.491
  comM Legionella pneumophila strain ERS1305867

50.202

97.83

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.556

97.83

0.436

Multiple sequence alignment