Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V5G23_RS21295 Genome accession   NZ_CP144925
Coordinates   4065235..4065597 (-) Length   120 a.a.
NCBI ID   WP_003181796.1    Uniprot ID   A0A6I1MJA4
Organism   Bacillus licheniformis strain CP13     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4060235..4070597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS21270 (V5G23_21270) flhB 4061742..4062821 (-) 1080 WP_003181806.1 flagellar biosynthesis protein FlhB -
  V5G23_RS21275 (V5G23_21275) fliR 4062821..4063597 (-) 777 WP_003181804.1 flagellar biosynthetic protein FliR -
  V5G23_RS21280 (V5G23_21280) fliQ 4063605..4063874 (-) 270 WP_003181801.1 flagellar biosynthesis protein FliQ -
  V5G23_RS21285 (V5G23_21285) fliP 4063890..4064555 (-) 666 WP_009328512.1 flagellar type III secretion system pore protein FliP -
  V5G23_RS21290 (V5G23_21290) fliZ 4064548..4065165 (-) 618 WP_229098720.1 flagella biosynthesis regulatory protein FliZ -
  V5G23_RS21295 (V5G23_21295) pilH 4065235..4065597 (-) 363 WP_003181796.1 response regulator Machinery gene
  V5G23_RS21300 (V5G23_21300) fliY 4065624..4066757 (-) 1134 WP_003181794.1 flagellar motor switch phosphatase FliY -
  V5G23_RS21305 (V5G23_21305) fliM 4066747..4067745 (-) 999 WP_003181789.1 flagellar motor switch protein FliM -
  V5G23_RS21310 (V5G23_21310) fliL 4067781..4068212 (-) 432 WP_009328514.1 flagellar basal body-associated protein FliL -
  V5G23_RS21315 (V5G23_21315) - 4068209..4068424 (-) 216 WP_003181786.1 flagellar FlbD family protein -
  V5G23_RS21320 (V5G23_21320) flgG 4068467..4069258 (-) 792 WP_003181784.1 flagellar basal body rod protein FlgG -
  V5G23_RS21325 (V5G23_21325) flgD 4069286..4069753 (-) 468 WP_003181782.1 flagellar hook assembly protein FlgD -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13280.60 Da        Isoelectric Point: 4.5762

>NTDB_id=848199 V5G23_RS21295 WP_003181796.1 4065235..4065597(-) (pilH) [Bacillus licheniformis strain CP13]
MAYKILVVDDAAFMRMMIKDILVKNGFEVVAEAQDGAQAVEKYKEHSPDLVTMDITMPEKDGITALKEIKEIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVMEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=848199 V5G23_RS21295 WP_003181796.1 4065235..4065597(-) (pilH) [Bacillus licheniformis strain CP13]
ATGGCTTACAAGATTTTAGTAGTTGATGATGCAGCATTTATGAGAATGATGATTAAAGATATTTTGGTGAAAAACGGCTT
TGAAGTCGTCGCAGAAGCGCAAGACGGGGCACAGGCTGTTGAAAAGTATAAAGAGCATTCACCTGATCTTGTCACAATGG
ATATCACGATGCCGGAAAAAGACGGAATCACGGCTCTTAAAGAAATCAAGGAAATCGATCCGCAGGCAAAAATCATCATG
TGTTCGGCAATGGGCCAGCAATCGATGGTTATCGACGCCATCCAGGCGGGAGCGAAAGACTTTATCGTCAAACCGTTCCA
GGCTGACCGCGTCATGGAAGCCATCAATAAAACGCTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MJA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.136

98.333

0.375