Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   V5G23_RS20600 Genome accession   NZ_CP144925
Coordinates   3923910..3924392 (-) Length   160 a.a.
NCBI ID   WP_009328420.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP13     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3918910..3929392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS20560 (V5G23_20560) - 3919079..3919465 (+) 387 WP_021837858.1 hypothetical protein -
  V5G23_RS20565 (V5G23_20565) - 3919484..3919738 (+) 255 WP_009328416.1 phage holin -
  V5G23_RS20570 (V5G23_20570) - 3919757..3920056 (+) 300 WP_034291560.1 hypothetical protein -
  V5G23_RS20575 (V5G23_20575) - 3920264..3920341 (+) 78 WP_003180750.1 putative holin-like toxin -
  V5G23_RS20580 (V5G23_20580) - 3920744..3920872 (-) 129 WP_256692922.1 hypothetical protein -
  V5G23_RS20585 (V5G23_20585) rapC 3920869..3921975 (-) 1107 WP_009328417.1 tetratricopeptide repeat protein Regulator
  V5G23_RS20590 (V5G23_20590) - 3922086..3923345 (-) 1260 WP_009328418.1 MFS transporter -
  V5G23_RS20595 (V5G23_20595) - 3923487..3923840 (-) 354 WP_338433584.1 hypothetical protein -
  V5G23_RS20600 (V5G23_20600) rok 3923910..3924392 (-) 483 WP_009328420.1 hypothetical protein Regulator
  V5G23_RS20605 (V5G23_20605) - 3924678..3925136 (-) 459 WP_009328421.1 SMI1/KNR4 family protein -
  V5G23_RS20610 (V5G23_20610) - 3925177..3925599 (-) 423 WP_009328422.1 SMI1/KNR4 family protein -
  V5G23_RS20615 (V5G23_20615) - 3925614..3927569 (-) 1956 WP_009328423.1 T7SS effector LXG polymorphic toxin -
  V5G23_RS20620 (V5G23_20620) - 3927728..3928282 (-) 555 WP_338433585.1 SMI1/KNR4 family protein -
  V5G23_RS20625 (V5G23_20625) - 3928305..3929294 (-) 990 WP_017474526.1 HNH endonuclease -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18464.27 Da        Isoelectric Point: 10.5742

>NTDB_id=848191 V5G23_RS20600 WP_009328420.1 3923910..3924392(-) (rok) [Bacillus licheniformis strain CP13]
MFNEREALRLRLEQLNDKEIIVMRELREEREGIYSKLRELDKNQSNPPQVRESSSLMDLVSAAAQELKQSKSSSPRIQTN
NASQPFNKSITSIQREAALKILSMHKEGIRGAGLRKEIEKETGMKVKNMTTFMSGLMKHHPEIKKPGRGHYVIKREKSFE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=848191 V5G23_RS20600 WP_009328420.1 3923910..3924392(-) (rok) [Bacillus licheniformis strain CP13]
ATGTTTAATGAACGAGAAGCGTTACGTTTGAGGCTTGAGCAGCTAAACGATAAAGAAATTATTGTCATGAGAGAGCTCAG
AGAAGAACGAGAAGGTATTTATTCAAAGTTGCGCGAGTTGGACAAAAACCAGAGTAATCCTCCTCAAGTCAGAGAAAGCT
CTTCATTGATGGATTTAGTTAGCGCAGCAGCCCAAGAATTGAAACAGTCTAAAAGCTCATCTCCACGCATTCAGACAAAC
AATGCCTCGCAACCCTTTAATAAGTCTATAACATCTATACAGCGTGAAGCAGCACTTAAAATATTGAGTATGCATAAAGA
AGGCATTAGAGGGGCAGGGCTTCGTAAGGAAATTGAGAAAGAAACAGGCATGAAAGTTAAAAATATGACAACTTTTATGA
GCGGACTCATGAAACACCATCCTGAAATCAAAAAACCAGGCCGCGGTCATTATGTTATTAAGCGTGAAAAGTCCTTTGAG
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

42.623

100

0.488