Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QUC26_RS23570 Genome accession   NZ_CP128508
Coordinates   5046093..5047463 (-) Length   456 a.a.
NCBI ID   WP_003251626.1    Uniprot ID   I7AVL1
Organism   Pseudomonas asiatica strain F19-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5041093..5052463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUC26_RS23550 (QUC26_23550) - 5041317..5041514 (-) 198 WP_013974210.1 YbdD/YjiX family protein -
  QUC26_RS23555 (QUC26_23555) - 5041528..5043594 (-) 2067 WP_024087740.1 carbon starvation CstA family protein -
  QUC26_RS23560 (QUC26_23560) - 5043773..5044135 (+) 363 WP_047595813.1 PilZ domain-containing protein -
  QUC26_RS23565 (QUC26_23565) - 5044399..5045916 (+) 1518 WP_289331866.1 nucleobase:cation symporter-2 family protein -
  QUC26_RS23570 (QUC26_23570) radA 5046093..5047463 (-) 1371 WP_003251626.1 DNA repair protein RadA Machinery gene
  QUC26_RS23575 (QUC26_23575) mscL 5047641..5048060 (+) 420 WP_013974214.1 large-conductance mechanosensitive channel protein MscL -
  QUC26_RS23580 (QUC26_23580) - 5048095..5048871 (-) 777 WP_023661108.1 ferredoxin--NADP reductase -
  QUC26_RS23585 (QUC26_23585) - 5049083..5049790 (+) 708 WP_013974216.1 autoinducer binding domain-containing protein -
  QUC26_RS23590 (QUC26_23590) - 5049887..5051011 (+) 1125 WP_289331867.1 methyltransferase -
  QUC26_RS23595 (QUC26_23595) - 5051128..5051283 (-) 156 WP_013974218.1 DUF2474 domain-containing protein -
  QUC26_RS23600 (QUC26_23600) cydB 5051293..5052300 (-) 1008 WP_013974219.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48741.18 Da        Isoelectric Point: 6.8985

>NTDB_id=848156 QUC26_RS23570 WP_003251626.1 5046093..5047463(-) (radA) [Pseudomonas asiatica strain F19-1]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=848156 QUC26_RS23570 WP_003251626.1 5046093..5047463(-) (radA) [Pseudomonas asiatica strain F19-1]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGTGCGACCTTCCCCAAATGGGCCGGCCAGTGTGGCGAATG
CGGGGCCTGGAACACCCTGGTCGAGACCATGATCGAAAGCGGCGGTGCCGCTGCGCCCAGTAGCGGCCGTGCTGGCTGGA
CCGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAGATCCCGCGCTTCACCACCAGCAGCACCGAA
CTGGACCGCGTGTTGGGCGGTGGCCTGGTGGATGGCTCGGTGGTGTTGATCGGTGGTGACCCCGGCATCGGTAAATCGAC
CATCCTGCTGCAGACCTTGTGCAACATTGCCGTGGGCATGCCGGCGCTGTATGTCACCGGCGAGGAGTCGCAGCAGCAGG
TGGCCATGCGCTCCCGGCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTGATGACCGAAACCTGCATCGAGACCATCATC
GCCACGGCCCGCGTCGAAAAACCGCGGGTCATGGTGATCGACTCGATCCAGACCATTTTCACCGAGCAGCTGCAATCGGC
ACCCGGCGGTGTGGCCCAGGTGCGCGAAAGTACGGCGTTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCC
TGGTCGGCCACGTGACCAAGGAAGGCTCGCTCGCCGGCCCGCGGGTACTCGAGCACATGGTCGATACCGTGCTGTATTTC
GAAGGTGAGTCCGATGGCCGCCTGCGCCTGCTGCGGGCAGTCAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGTGTGTT
CGGCATGACCGACCGGGGCCTGAAGGAGGTGTCCAACCCCTCGGCGATCTTCCTCAACCGCACCCAGGAGGAAGTACCGG
GCAGCGTGGTGATGGCCACCTGGGAGGGCACCCGGCCGATGCTGGTGGAGGTGCAGGCGCTGGTCGACGACAGCCACCTG
GCCAACCCGCGCCGGGTGACCCTGGGCCTTGACCAGAATCGCCTGGCAATGTTGCTGGCGGTGCTGCACCGCCATGGCGG
CATTCCCACCCATGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTACTGGAAACCGCTTCTGACCTGGCGC
TGCTGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCCTGGCCCATGGCCTGCTGGTGTTTGGCGAGATCGGTCTGTCC
GGCGAGGTACGGCCGGTGCCCAGTGGTCAGGAGCGTTTGAAGGAGGCCGCCAAGCATGGTTTCAAGCGGGCCATCGTGCC
CAAGGGCAATGCGCCGAAAGAGGCTCCGGCCGGGTTGCAGGTGATTGCCGTTACCCGGCTGGAGCAGGCTCTGGATGCGT
TATTCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7AVL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus mitis NCTC 12261

45.87

100

0.463
  radA Streptococcus mitis SK321

46.053

100

0.461